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The map label for this gene is dppB [H]

Identifier: 46445736

GI number: 46445736

Start: 165274

End: 166770

Strand: Reverse

Name: dppB [H]

Synonym: pc0102

Alternate gene names: 46445736

Gene position: 166770-165274 (Counterclockwise)

Preceding gene: 46445737

Following gene: 46445735

Centisome position: 6.91

GC content: 35.47

Gene sequence:

>1497_bases
ATGTGGAATTATGTCTTAAGACGATTTCTTCTTCTTCCACTAACCCTTTTCTTTATTGTTTTAATAAATTTTATCATTAT
TAATCTCGCTCCAGGTGACCCCGTTTCTTTTGCAGAAATCTCACAAGAAGGAGCCACTCGAAGAGAAGATCGATCCATAG
CATGTGGTGGTGATGAACGTTATTTGCAATTTAGAGATTTCTACGGCTTAACGTTGCCTGTTTTGTTTAACAATTGGCCC
TCTTTATCTCAAGATTATGTTAAACAAACATTGTGGCAGCTTGCGAATCGGAAACTGACTCCAGAAAGTTTGAATGAACT
TCCCGTTAAAGATTATGATGCCATACGAGTCACTTTTGGAGATCAATCGCGTTATCTCATGTCTAAATTGATCATTATTT
TAGTTGATCCCGAGACTTCAGAAAACGTTCGCAGATTAGCTTCTCATTTTTTTGTGAGAGGAGGTTCTAGGCAAGGTTAT
ATTGGATCTAACATTAACCCTGAACAAAAAGCCTGGAATAAAAAAGTCGCTGAAGATAATCAATATCTGCGCACTCTTCT
TTGGCAATCTTCTGCATCCCCTTTAGAAGTATCTAAAAAAATTAAACTCATACAAGAATGGTACGAAAAAAATAAAGCTT
TTTATCGTTTAGATCCGTCAAAAGAATTATGGAAAATATTTTTTACCGAAACACGCTTCACAAGGTATATGAGTCGCATT
CTTCATTTAGATTTTGGCACATTGCGTAATGATTCAAGTAAGCCTGTTCTTACCGAAGTCACGAAGCGATTTAAATATTC
TTTAACCCTTTCACTTTTGCCCATGCTCATCACTTTTGTATTGTGTCAATTTTTTGGATTCATTATGGCTTATAAACACA
ATCAATGGATTGACTATACCCTTAATCTTATTTTTCTAGTTTTATATGCCATTCCTATTTTTGTAGTGGCTCCTTTTTTA
ATCGAAAAAGTTGCCTTGCACAATACATTTCCTTTTACAGATATTCCTATTCCGATTAGTGGTTTTACAAATCCCGATCG
AATCTATCATCAGGAAAATTCTTATCAGCGTCTATTTGATATCATTCAACATATTGCTCTTCCAATTGTAGCGGTTATGT
ATGGGAGTTTAGCCGCAGAATCTCGCTTATCGCGCACAGCCGTTTTAGAAGTTTTAAGACAAGACTACATTCGAACAGCT
AAAGCAAAAGGCGTACCTCCTTTTAAGATTTTATTTAAACACGTAGGACGTAATGCCGCTATTACGATTGTTACCTCATT
AGCAAGCTCTCTCGGCATCTTGTTAGGAGGGTCATTAATTGTTGAAACCCTATTTGATATCAATGGTTTTGGAAAATTTT
TTTATGATGCCATTATCAATAGAGATTATAATGTCATTATGTTTTCGACTTTGGCTGGATCATTTTTAACATTAATGGGC
TATTTGTTAGCCGATTTAGCCTATATGTGGTTAGATCCTCGCATTACTTTAGACTGA

Upstream 100 bases:

>100_bases
AGATTTAATCCCGGGAGCTAATGTAGGCGAACCTATTGCAAACTTATTTTGGATTAAAGATACTTCTAAAAAACAAGAAA
AATACCTTGGGAACTAAAAG

Downstream 100 bases:

>100_bases
TATTTGGTATCCTTATGCATCATCATTCTTCTTACACTTATTGGCAGACTGTTTGGAAACAATTTAAACAAAATCCTCTC
GCCATATTTGCTTTAATCGT

Product: putative dipeptide transport system permease protein, dppB

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MWNYVLRRFLLLPLTLFFIVLINFIIINLAPGDPVSFAEISQEGATRREDRSIACGGDERYLQFRDFYGLTLPVLFNNWP
SLSQDYVKQTLWQLANRKLTPESLNELPVKDYDAIRVTFGDQSRYLMSKLIIILVDPETSENVRRLASHFFVRGGSRQGY
IGSNINPEQKAWNKKVAEDNQYLRTLLWQSSASPLEVSKKIKLIQEWYEKNKAFYRLDPSKELWKIFFTETRFTRYMSRI
LHLDFGTLRNDSSKPVLTEVTKRFKYSLTLSLLPMLITFVLCQFFGFIMAYKHNQWIDYTLNLIFLVLYAIPIFVVAPFL
IEKVALHNTFPFTDIPIPISGFTNPDRIYHQENSYQRLFDIIQHIALPIVAVMYGSLAAESRLSRTAVLEVLRQDYIRTA
KAKGVPPFKILFKHVGRNAAITIVTSLASSLGILLGGSLIVETLFDINGFGKFFYDAIINRDYNVIMFSTLAGSFLTLMG
YLLADLAYMWLDPRITLD

Sequences:

>Translated_498_residues
MWNYVLRRFLLLPLTLFFIVLINFIIINLAPGDPVSFAEISQEGATRREDRSIACGGDERYLQFRDFYGLTLPVLFNNWP
SLSQDYVKQTLWQLANRKLTPESLNELPVKDYDAIRVTFGDQSRYLMSKLIIILVDPETSENVRRLASHFFVRGGSRQGY
IGSNINPEQKAWNKKVAEDNQYLRTLLWQSSASPLEVSKKIKLIQEWYEKNKAFYRLDPSKELWKIFFTETRFTRYMSRI
LHLDFGTLRNDSSKPVLTEVTKRFKYSLTLSLLPMLITFVLCQFFGFIMAYKHNQWIDYTLNLIFLVLYAIPIFVVAPFL
IEKVALHNTFPFTDIPIPISGFTNPDRIYHQENSYQRLFDIIQHIALPIVAVMYGSLAAESRLSRTAVLEVLRQDYIRTA
KAKGVPPFKILFKHVGRNAAITIVTSLASSLGILLGGSLIVETLFDINGFGKFFYDAIINRDYNVIMFSTLAGSFLTLMG
YLLADLAYMWLDPRITLD
>Mature_498_residues
MWNYVLRRFLLLPLTLFFIVLINFIIINLAPGDPVSFAEISQEGATRREDRSIACGGDERYLQFRDFYGLTLPVLFNNWP
SLSQDYVKQTLWQLANRKLTPESLNELPVKDYDAIRVTFGDQSRYLMSKLIIILVDPETSENVRRLASHFFVRGGSRQGY
IGSNINPEQKAWNKKVAEDNQYLRTLLWQSSASPLEVSKKIKLIQEWYEKNKAFYRLDPSKELWKIFFTETRFTRYMSRI
LHLDFGTLRNDSSKPVLTEVTKRFKYSLTLSLLPMLITFVLCQFFGFIMAYKHNQWIDYTLNLIFLVLYAIPIFVVAPFL
IEKVALHNTFPFTDIPIPISGFTNPDRIYHQENSYQRLFDIIQHIALPIVAVMYGSLAAESRLSRTAVLEVLRQDYIRTA
KAKGVPPFKILFKHVGRNAAITIVTSLASSLGILLGGSLIVETLFDINGFGKFFYDAIINRDYNVIMFSTLAGSFLTLMG
YLLADLAYMWLDPRITLD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=291, Percent_Identity=30.9278350515464, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1788504, Length=274, Percent_Identity=32.8467153284672, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1787053, Length=264, Percent_Identity=30.3030303030303, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787497, Length=267, Percent_Identity=26.9662921348315, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787761, Length=273, Percent_Identity=30.4029304029304, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789888, Length=265, Percent_Identity=26.7924528301887, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787550, Length=264, Percent_Identity=23.1060606060606, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 57553; Mature: 57553

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWNYVLRRFLLLPLTLFFIVLINFIIINLAPGDPVSFAEISQEGATRREDRSIACGGDER
CHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCCCEECCCCHH
YLQFRDFYGLTLPVLFNNWPSLSQDYVKQTLWQLANRKLTPESLNELPVKDYDAIRVTFG
HHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEEC
DQSRYLMSKLIIILVDPETSENVRRLASHFFVRGGSRQGYIGSNINPEQKAWNKKVAEDN
CCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHH
QYLRTLLWQSSASPLEVSKKIKLIQEWYEKNKAFYRLDPSKELWKIFFTETRFTRYMSRI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
LHLDFGTLRNDSSKPVLTEVTKRFKYSLTLSLLPMLITFVLCQFFGFIMAYKHNQWIDYT
HHHCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LNLIFLVLYAIPIFVVAPFLIEKVALHNTFPFTDIPIPISGFTNPDRIYHQENSYQRLFD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH
IIQHIALPIVAVMYGSLAAESRLSRTAVLEVLRQDYIRTAKAKGVPPFKILFKHVGRNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHH
ITIVTSLASSLGILLGGSLIVETLFDINGFGKFFYDAIINRDYNVIMFSTLAGSFLTLMG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
YLLADLAYMWLDPRITLD
HHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MWNYVLRRFLLLPLTLFFIVLINFIIINLAPGDPVSFAEISQEGATRREDRSIACGGDER
CHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCCCEECCCCHH
YLQFRDFYGLTLPVLFNNWPSLSQDYVKQTLWQLANRKLTPESLNELPVKDYDAIRVTFG
HHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEEEC
DQSRYLMSKLIIILVDPETSENVRRLASHFFVRGGSRQGYIGSNINPEQKAWNKKVAEDN
CCHHHHHHCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHH
QYLRTLLWQSSASPLEVSKKIKLIQEWYEKNKAFYRLDPSKELWKIFFTETRFTRYMSRI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
LHLDFGTLRNDSSKPVLTEVTKRFKYSLTLSLLPMLITFVLCQFFGFIMAYKHNQWIDYT
HHHCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LNLIFLVLYAIPIFVVAPFLIEKVALHNTFPFTDIPIPISGFTNPDRIYHQENSYQRLFD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH
IIQHIALPIVAVMYGSLAAESRLSRTAVLEVLRQDYIRTAKAKGVPPFKILFKHVGRNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHH
ITIVTSLASSLGILLGGSLIVETLFDINGFGKFFYDAIINRDYNVIMFSTLAGSFLTLMG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHH
YLLADLAYMWLDPRITLD
HHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]