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The map label for this gene is oppC [H]

Identifier: 46445735

GI number: 46445735

Start: 163541

End: 165304

Strand: Reverse

Name: oppC [H]

Synonym: pc0101

Alternate gene names: 46445735

Gene position: 165304-163541 (Counterclockwise)

Preceding gene: 46445736

Following gene: 46445731

Centisome position: 6.85

GC content: 36.34

Gene sequence:

>1764_bases
GTGGTTAGATCCTCGCATTACTTTAGACTGATATTTGGTATCCTTATGCATCATCATTCTTCTTACACTTATTGGCAGAC
TGTTTGGAAACAATTTAAACAAAATCCTCTCGCCATATTTGCTTTAATCGTTGTGTGTTTATTTTGTTTAGCGGGTATCT
ACGCTCCTTTTTTAGCTTCTAGTAAACCTATTGTTGTCCAATATGAAGGAAATTGGTACTTCCCTCTTTTTCGCTATCTC
TTTTTTCCTGGTTTTTTCACAAAACCCCTTGATATTTTCTACAATTTACTCATTTTCACTTTACCACTTTTTATAGCCAC
TTGGTGTTTATTAAAAAAACGACACACTTACCGCCTATGGACTTTTATTTTTTTATGCCTTCTACAAATCATTTTGTTTT
TAGGGATTTTATATCATAATGATCAAGACCCTTCAGCAAGCTTAGAACTTAATGAGAAAAGACAGCAATCTATTCAAAAA
CAACTCGATTTAAAAAAAGCAAATCCACTTCTAGCGCCTTCTTTTACTCCGAATTGGGAAAAAGAGTTATCGTATATGAC
CCCTTATGCTAGGCTTAATTTGGTTTTACGTTATCAACAAAGACTTAATCAAGATCAACGATTAAAAGCCGAAGCTCATG
CATTTTTGACTGTTGAAAAAATGAAAAAAAATGAGAGTTACTCAATTGCCTCTTTATGGCAACAAGAAAAACGACACGAA
AAACAAGAAATTGAAAGGCAACAAATTTTAGTCACTCAAAATCAAGCAGTTTATCCGCAGGCTAAGGCACATATAAACGC
ATTGATGGATAAATGTCAAACAAGCTCTCTCGATCACTTACCTTCTTGGCAAACATGTAAATACTTAACCAAAATTTCTC
CTCAAGAGAAAGAGAGCTTACTAAATTCAAAAAACATTGTTGACACTTACGAACGTGCGCAAAGTCAATTGAATTATCTT
CATGATAAACAAGTATGGCTTGAAAACCAAATACCCAAGCTTAAGTATGAAATTATGCCTTTATTGCGCCCTTTTCATTG
GGAAGACGATGCAGGAGGAGAACAAGCTTTGAACAAACACATAAGTTGGTGGGAATTAACACGAGTCAATCGCAAAGACA
TGGTCGCTGCTTTAATTTTTGGTATCCGTGTTTCCCTTTCAGTGGGCCTTCTTTCTATCGTGATTGCGCTACTGATTGGA
ATTCCAGTTGGAGCCGTTTCAGGTTATTATGGAGGCAAAATAGATATAATCATATATCGATTAATTGAAATCTGGGAGTC
AATGCCAACCTTTTTTATGTTATTAATGATTGTCGCTTTTTTACAAAATAAATCGATTTTCTTAGTGATTGCCATCATTG
GTCTATTTGGATGGACAGGATTTAGCCGTTTTATTCGCGGAGAATTTTTTAGACAGAAACAACTACCATATGTCGAAGCT
TGTCATGCACAAGGATTTAGTAATCGGTATATCATGTTTTCTCATCTTCTTCCCAATGCAATCCCCCCCTTACTTACTCT
CGTTCCTTTTGCCATTATGGGAGCTATTACCAGCGAGACAGGGCTTTCCTTTTTAGGTTTAGGAGAAGAAGGATCTAGCT
CCTGGGGAGTTTTAATGGATGAGGGACGAACTGCTTTTCCTTCTGAAAGTTATTTACTTTGGCCCCCTGCCACTTTACTT
ACTATTCTTCTAGTGGCAATCGCTCTTGTTGGTGACGCATTAAGGGATGCACTCGATCCTAAATTACATTCGCATGATAT
ATAA

Upstream 100 bases:

>100_bases
ATGCCATTATCAATAGAGATTATAATGTCATTATGTTTTCGACTTTGGCTGGATCATTTTTAACATTAATGGGCTATTTG
TTAGCCGATTTAGCCTATAT

Downstream 100 bases:

>100_bases
GCTGATTCAAAAAAAATTGATAAAGAATTTCAAATTCTTTTTGAATTTTTGCTGATATTGAATAAATCACTCTAATTGTG
TTATTTGTTCAAATATCTTT

Product: putative oligopeptide transport system permease protein, oppC

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MVRSSHYFRLIFGILMHHHSSYTYWQTVWKQFKQNPLAIFALIVVCLFCLAGIYAPFLASSKPIVVQYEGNWYFPLFRYL
FFPGFFTKPLDIFYNLLIFTLPLFIATWCLLKKRHTYRLWTFIFLCLLQIILFLGILYHNDQDPSASLELNEKRQQSIQK
QLDLKKANPLLAPSFTPNWEKELSYMTPYARLNLVLRYQQRLNQDQRLKAEAHAFLTVEKMKKNESYSIASLWQQEKRHE
KQEIERQQILVTQNQAVYPQAKAHINALMDKCQTSSLDHLPSWQTCKYLTKISPQEKESLLNSKNIVDTYERAQSQLNYL
HDKQVWLENQIPKLKYEIMPLLRPFHWEDDAGGEQALNKHISWWELTRVNRKDMVAALIFGIRVSLSVGLLSIVIALLIG
IPVGAVSGYYGGKIDIIIYRLIEIWESMPTFFMLLMIVAFLQNKSIFLVIAIIGLFGWTGFSRFIRGEFFRQKQLPYVEA
CHAQGFSNRYIMFSHLLPNAIPPLLTLVPFAIMGAITSETGLSFLGLGEEGSSSWGVLMDEGRTAFPSESYLLWPPATLL
TILLVAIALVGDALRDALDPKLHSHDI

Sequences:

>Translated_587_residues
MVRSSHYFRLIFGILMHHHSSYTYWQTVWKQFKQNPLAIFALIVVCLFCLAGIYAPFLASSKPIVVQYEGNWYFPLFRYL
FFPGFFTKPLDIFYNLLIFTLPLFIATWCLLKKRHTYRLWTFIFLCLLQIILFLGILYHNDQDPSASLELNEKRQQSIQK
QLDLKKANPLLAPSFTPNWEKELSYMTPYARLNLVLRYQQRLNQDQRLKAEAHAFLTVEKMKKNESYSIASLWQQEKRHE
KQEIERQQILVTQNQAVYPQAKAHINALMDKCQTSSLDHLPSWQTCKYLTKISPQEKESLLNSKNIVDTYERAQSQLNYL
HDKQVWLENQIPKLKYEIMPLLRPFHWEDDAGGEQALNKHISWWELTRVNRKDMVAALIFGIRVSLSVGLLSIVIALLIG
IPVGAVSGYYGGKIDIIIYRLIEIWESMPTFFMLLMIVAFLQNKSIFLVIAIIGLFGWTGFSRFIRGEFFRQKQLPYVEA
CHAQGFSNRYIMFSHLLPNAIPPLLTLVPFAIMGAITSETGLSFLGLGEEGSSSWGVLMDEGRTAFPSESYLLWPPATLL
TILLVAIALVGDALRDALDPKLHSHDI
>Mature_587_residues
MVRSSHYFRLIFGILMHHHSSYTYWQTVWKQFKQNPLAIFALIVVCLFCLAGIYAPFLASSKPIVVQYEGNWYFPLFRYL
FFPGFFTKPLDIFYNLLIFTLPLFIATWCLLKKRHTYRLWTFIFLCLLQIILFLGILYHNDQDPSASLELNEKRQQSIQK
QLDLKKANPLLAPSFTPNWEKELSYMTPYARLNLVLRYQQRLNQDQRLKAEAHAFLTVEKMKKNESYSIASLWQQEKRHE
KQEIERQQILVTQNQAVYPQAKAHINALMDKCQTSSLDHLPSWQTCKYLTKISPQEKESLLNSKNIVDTYERAQSQLNYL
HDKQVWLENQIPKLKYEIMPLLRPFHWEDDAGGEQALNKHISWWELTRVNRKDMVAALIFGIRVSLSVGLLSIVIALLIG
IPVGAVSGYYGGKIDIIIYRLIEIWESMPTFFMLLMIVAFLQNKSIFLVIAIIGLFGWTGFSRFIRGEFFRQKQLPYVEA
CHAQGFSNRYIMFSHLLPNAIPPLLTLVPFAIMGAITSETGLSFLGLGEEGSSSWGVLMDEGRTAFPSESYLLWPPATLL
TILLVAIALVGDALRDALDPKLHSHDI

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788505, Length=222, Percent_Identity=36.4864864864865, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1787498, Length=246, Percent_Identity=34.5528455284553, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1787054, Length=223, Percent_Identity=29.1479820627803, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787760, Length=220, Percent_Identity=30.9090909090909, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1789889, Length=218, Percent_Identity=30.2752293577982, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1789964, Length=243, Percent_Identity=30.0411522633745, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 67948; Mature: 67948

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]