| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445637
Identifier: 46445637
GI number: 46445637
Start: 1055
End: 4024
Strand: Direct
Name: 46445637
Synonym: pc0003
Alternate gene names: NA
Gene position: 1055-4024 (Clockwise)
Preceding gene: 46445636
Following gene: 46445638
Centisome position: 0.04
GC content: 34.11
Gene sequence:
>2970_bases TTGTGTGAGAAAGTGAATAAAGAAAAAATTAATACAATTTTAAGCTTAGTCAAAGCTCCTCTTAATCATCCATTTTTTTA TCCACGAATTTTTGCTTTAATCGCTAAACAAAAAAAGCAAGAAAGATTAGCAGCGGATAAAATTTGTGCTTATATAGTTG AAGAATACGAAGAAATTTCTCGACGGTTAGATCGTTCGCAAATTCAAGAAAGTTGTTCTGTTCGCAACATTTTACGAACA GGCCATTTAGCGGCCCTTTTAATCGATGATAAAGGTGAAATTAATTTCGCGGTCTTGCCAACGCTTATTCAAAAATTTAA ATCCCATTTATATTCTCTTGGACCTAACAGACAATATGATTCTAAACGTCAAGAGCATATCTTGAAAGTTTTACAATTTT TGTTAACTAATAAAGAGCTAGTCCGATCCTTAAAAAAAATTTCAAAACCTTTATCGAATAAAATTGCTGAAGACATTATT AAGCAAACGTTGCAAATTCCTTCACAAACCGTTATTACAGATGCGCATGCAAAAAGAGCTGTTTTAGCTGCCTGGTTATG TTATTTACGGCAAAATGTTGGATCTTGTTTTGCAACCGCACCGGCTGAAATTATTCAAAATGAACAGCCCGAACAATTTT TGCAGGATATGACCGATTTACTCGCGACAGGCCGTTTAAAACGTACATTTGGGGGAGCAGAATATTCAGTTCCCATTAGT GCAAGTTGGGGAAGTGGGGATTTAAAAAAACCTTTGCTCCTTTCTATCTCTTCTAAAAAAATCTCGCCTGAGATTTGGTA TTCTCCTGGATTAATAGTCGCTTTTGAAGCTGTTGGATTACTTCAAAAAAATGAAAAGCTTAAAGATAAAATCAAAAGGC TTAAAGATTGGATTGATCCAATCATTTTACAACATTCGCGTCACACTAATTATTGCATAGTGACAGCAGAAGTGATTTTA AGAACTATTTTAAGGCAGTCTATAGGACTTTCAGAACAACAAATTAAAGATTACGAAGAGCGTCCTAGAGGCATGATTCA AAGTAATTTAATGCAAATACCTGCTATTGGTAAACAAACAGGAGGAATTGGAGAAAAATGTGCTAATTTTCTTTATTTGT TTGAAATAGGTAAAAATGCTTTTAAATCTTTAGCTGATAATGCCTTACTAAAAACTTGGGAATTTACTTTAGCTTCTTTT TCCGAAACTAAATTAGAGTTTACGACTTGGAATTTGTATGCCAGTTTAGGAATGGGTTCCCACGAGCAAGGAGGAATTGG ACATTGTATCCAAGAGCAGATTCAATATAAACTAGATCAAGCAAATAAACTTGTTCAAGATGCTCAATATGAGTATGAGA TGATGTATACGCATGTCAAAACTTTAGAATCACGCATTAGGCATGCCAGTGAGAAAGAAGCTCAGTGGTTGAAAATGGAA TATCAAAACAGAGCTAATGAATTATATTTTATCCAAGATCAACGAGACGATGCTCATCAGCGCGCTTCTGCTTTAGTTAA TCTTTATGAATCTCTTTATAAAATCTATTTAGAGTTGTTTAGAGAGTATTTCCAAGAAGTTTACGATGCAGATATGCAAG AAGTGTTGACAGGTCCTTTTGATGATAGTCCTGCAGGATTCAGGTTGCTTTATAAGCACGGAAGAAGCAATTCTTCACAA TGGACAAGAATCAAAAATCAAACAGATTTTATTGATTCATTAACATCTTTTTTTGTCGCAACAGAACCTCAAATTGCCTC CATGTTACAAAATTTAGGGTTAGAAAAAGATCTTGGTGAAGTTGTTACAGCTATTGTTAATCACGTAAAAACTAAAGAGT TTTTAGAAACAGCTTTTTATCGCATGGCAGCAGCTCATCGTATGCCCATTCCTCAAAATCCTCTTGACCATTTAGACCAA ATAGAAAAAAAACCTTGGGTTTATACCTCTGGAGGAACGATGAATACGCTTGTTAGTTGTTATTATCGAATAGAAGACAA GCCACAGGAAGGGGCGAAATGGGTAGAAAGTGAGATGGAATTACTCGTTTTTTTTGCCGATACTTTAAAGCATATTCCAC GAAAGCAGATGGAGCCTTACTTAGAAGGAAGGCGGCAATCTATGCTAATTCAATCACCTACACATGCTTTTTTATTAAAA CCCAATTTAACTCCTTTTAAGGATGCTTGGATAGGTGATGAATTTACGTATACATCCGTTCGAGATAAATTTGTTAAACC GGCTGAGTTTTTTATTGAAAAAATTGTTTTAGATCACAATATGATCCATTCATTTTTACAAGAATTAATAGAAAAGATTC CGGAAAATTTTCAACCTCGTTTTAAAGCTGTTTTTCAGAATTTGACAGGTCCTTTAAATCCCCTATATTTTAGAGAAATT ATTGTAGATACTTTGCAACAAGATAGAGGATTAAATATCGGTAAAAAATCCATCTTATCAGCAGACGAATTAGATAGCCT TTTATATTCTAGACTTCCTTATTTTTCAATTTATGAGCTGAAAGAAAAAATTTATCAAATTTTAATTCTTTTACCAGGCA TAACCTCCTCAAAAGCAGATGAAATTTTGAGCTATTTTGATCAAATTTCTTTATCTAAATCTCAGTACGTCATGAGCGCT AATCAGTTGCAAGATATTTGTAAAGCATTGATTTGCCTCTCTGAAATGCAAACAACTTTTTCAATCGATTATCATTGGCA TATTAGTTTTACTTGTCAAAAACTTGGTTTTGCTATGCCAGCTCCCATTATCTTTGCAGATACAAATTGGGTGAAAGATG AATTTGGGTTTGTTGTGAATCCTGGTACAGGACGTTTAGAATTGTGGCGAGTTGATTATACAGGTTCTATTGGATATCCG ATGTCTATTTGGAAAGAATGGGTAAATGGAACCCGCACAGATCTAAAATGGGGAATTTATATAAAGCCAACCGAATATGG ACAAGTTTAA
Upstream 100 bases:
>100_bases TGAGAGTATTTCCTATATAAAGAAAAATATTGTAAATTTACAAAAAACTCCCGCTAATGCACAAATTTGTATTCCTGCTT TTTGATTGATCAAACGTTTA
Downstream 100 bases:
>100_bases CTTTCCTACGTATAGTTTGTATTACAAAAATAATAATAAAAATATGTAAGTTAGAATTAATTTAATTTTGTTTGCAAAAC CCTAACTATAATCAAAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 989; Mature: 989
Protein sequence:
>989_residues MCEKVNKEKINTILSLVKAPLNHPFFYPRIFALIAKQKKQERLAADKICAYIVEEYEEISRRLDRSQIQESCSVRNILRT GHLAALLIDDKGEINFAVLPTLIQKFKSHLYSLGPNRQYDSKRQEHILKVLQFLLTNKELVRSLKKISKPLSNKIAEDII KQTLQIPSQTVITDAHAKRAVLAAWLCYLRQNVGSCFATAPAEIIQNEQPEQFLQDMTDLLATGRLKRTFGGAEYSVPIS ASWGSGDLKKPLLLSISSKKISPEIWYSPGLIVAFEAVGLLQKNEKLKDKIKRLKDWIDPIILQHSRHTNYCIVTAEVIL RTILRQSIGLSEQQIKDYEERPRGMIQSNLMQIPAIGKQTGGIGEKCANFLYLFEIGKNAFKSLADNALLKTWEFTLASF SETKLEFTTWNLYASLGMGSHEQGGIGHCIQEQIQYKLDQANKLVQDAQYEYEMMYTHVKTLESRIRHASEKEAQWLKME YQNRANELYFIQDQRDDAHQRASALVNLYESLYKIYLELFREYFQEVYDADMQEVLTGPFDDSPAGFRLLYKHGRSNSSQ WTRIKNQTDFIDSLTSFFVATEPQIASMLQNLGLEKDLGEVVTAIVNHVKTKEFLETAFYRMAAAHRMPIPQNPLDHLDQ IEKKPWVYTSGGTMNTLVSCYYRIEDKPQEGAKWVESEMELLVFFADTLKHIPRKQMEPYLEGRRQSMLIQSPTHAFLLK PNLTPFKDAWIGDEFTYTSVRDKFVKPAEFFIEKIVLDHNMIHSFLQELIEKIPENFQPRFKAVFQNLTGPLNPLYFREI IVDTLQQDRGLNIGKKSILSADELDSLLYSRLPYFSIYELKEKIYQILILLPGITSSKADEILSYFDQISLSKSQYVMSA NQLQDICKALICLSEMQTTFSIDYHWHISFTCQKLGFAMPAPIIFADTNWVKDEFGFVVNPGTGRLELWRVDYTGSIGYP MSIWKEWVNGTRTDLKWGIYIKPTEYGQV
Sequences:
>Translated_989_residues MCEKVNKEKINTILSLVKAPLNHPFFYPRIFALIAKQKKQERLAADKICAYIVEEYEEISRRLDRSQIQESCSVRNILRT GHLAALLIDDKGEINFAVLPTLIQKFKSHLYSLGPNRQYDSKRQEHILKVLQFLLTNKELVRSLKKISKPLSNKIAEDII KQTLQIPSQTVITDAHAKRAVLAAWLCYLRQNVGSCFATAPAEIIQNEQPEQFLQDMTDLLATGRLKRTFGGAEYSVPIS ASWGSGDLKKPLLLSISSKKISPEIWYSPGLIVAFEAVGLLQKNEKLKDKIKRLKDWIDPIILQHSRHTNYCIVTAEVIL RTILRQSIGLSEQQIKDYEERPRGMIQSNLMQIPAIGKQTGGIGEKCANFLYLFEIGKNAFKSLADNALLKTWEFTLASF SETKLEFTTWNLYASLGMGSHEQGGIGHCIQEQIQYKLDQANKLVQDAQYEYEMMYTHVKTLESRIRHASEKEAQWLKME YQNRANELYFIQDQRDDAHQRASALVNLYESLYKIYLELFREYFQEVYDADMQEVLTGPFDDSPAGFRLLYKHGRSNSSQ WTRIKNQTDFIDSLTSFFVATEPQIASMLQNLGLEKDLGEVVTAIVNHVKTKEFLETAFYRMAAAHRMPIPQNPLDHLDQ IEKKPWVYTSGGTMNTLVSCYYRIEDKPQEGAKWVESEMELLVFFADTLKHIPRKQMEPYLEGRRQSMLIQSPTHAFLLK PNLTPFKDAWIGDEFTYTSVRDKFVKPAEFFIEKIVLDHNMIHSFLQELIEKIPENFQPRFKAVFQNLTGPLNPLYFREI IVDTLQQDRGLNIGKKSILSADELDSLLYSRLPYFSIYELKEKIYQILILLPGITSSKADEILSYFDQISLSKSQYVMSA NQLQDICKALICLSEMQTTFSIDYHWHISFTCQKLGFAMPAPIIFADTNWVKDEFGFVVNPGTGRLELWRVDYTGSIGYP MSIWKEWVNGTRTDLKWGIYIKPTEYGQV >Mature_989_residues MCEKVNKEKINTILSLVKAPLNHPFFYPRIFALIAKQKKQERLAADKICAYIVEEYEEISRRLDRSQIQESCSVRNILRT GHLAALLIDDKGEINFAVLPTLIQKFKSHLYSLGPNRQYDSKRQEHILKVLQFLLTNKELVRSLKKISKPLSNKIAEDII KQTLQIPSQTVITDAHAKRAVLAAWLCYLRQNVGSCFATAPAEIIQNEQPEQFLQDMTDLLATGRLKRTFGGAEYSVPIS ASWGSGDLKKPLLLSISSKKISPEIWYSPGLIVAFEAVGLLQKNEKLKDKIKRLKDWIDPIILQHSRHTNYCIVTAEVIL RTILRQSIGLSEQQIKDYEERPRGMIQSNLMQIPAIGKQTGGIGEKCANFLYLFEIGKNAFKSLADNALLKTWEFTLASF SETKLEFTTWNLYASLGMGSHEQGGIGHCIQEQIQYKLDQANKLVQDAQYEYEMMYTHVKTLESRIRHASEKEAQWLKME YQNRANELYFIQDQRDDAHQRASALVNLYESLYKIYLELFREYFQEVYDADMQEVLTGPFDDSPAGFRLLYKHGRSNSSQ WTRIKNQTDFIDSLTSFFVATEPQIASMLQNLGLEKDLGEVVTAIVNHVKTKEFLETAFYRMAAAHRMPIPQNPLDHLDQ IEKKPWVYTSGGTMNTLVSCYYRIEDKPQEGAKWVESEMELLVFFADTLKHIPRKQMEPYLEGRRQSMLIQSPTHAFLLK PNLTPFKDAWIGDEFTYTSVRDKFVKPAEFFIEKIVLDHNMIHSFLQELIEKIPENFQPRFKAVFQNLTGPLNPLYFREI IVDTLQQDRGLNIGKKSILSADELDSLLYSRLPYFSIYELKEKIYQILILLPGITSSKADEILSYFDQISLSKSQYVMSA NQLQDICKALICLSEMQTTFSIDYHWHISFTCQKLGFAMPAPIIFADTNWVKDEFGFVVNPGTGRLELWRVDYTGSIGYP MSIWKEWVNGTRTDLKWGIYIKPTEYGQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 114090; Mature: 114090
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCEKVNKEKINTILSLVKAPLNHPFFYPRIFALIAKQKKQERLAADKICAYIVEEYEEIS CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLDRSQIQESCSVRNILRTGHLAALLIDDKGEINFAVLPTLIQKFKSHLYSLGPNRQYD HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCC SKRQEHILKVLQFLLTNKELVRSLKKISKPLSNKIAEDIIKQTLQIPSQTVITDAHAKRA HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHH VLAAWLCYLRQNVGSCFATAPAEIIQNEQPEQFLQDMTDLLATGRLKRTFGGAEYSVPIS HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEE ASWGSGDLKKPLLLSISSKKISPEIWYSPGLIVAFEAVGLLQKNEKLKDKIKRLKDWIDP CCCCCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IILQHSRHTNYCIVTAEVILRTILRQSIGLSEQQIKDYEERPRGMIQSNLMQIPAIGKQT HHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC GGIGEKCANFLYLFEIGKNAFKSLADNALLKTWEFTLASFSETKLEFTTWNLYASLGMGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCC HEQGGIGHCIQEQIQYKLDQANKLVQDAQYEYEMMYTHVKTLESRIRHASEKEAQWLKME CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH YQNRANELYFIQDQRDDAHQRASALVNLYESLYKIYLELFREYFQEVYDADMQEVLTGPF HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC DDSPAGFRLLYKHGRSNSSQWTRIKNQTDFIDSLTSFFVATEPQIASMLQNLGLEKDLGE CCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHH VVTAIVNHVKTKEFLETAFYRMAAAHRMPIPQNPLDHLDQIEKKPWVYTSGGTMNTLVSC HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHH YYRIEDKPQEGAKWVESEMELLVFFADTLKHIPRKQMEPYLEGRRQSMLIQSPTHAFLLK HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHEEECCCCEEEEC PNLTPFKDAWIGDEFTYTSVRDKFVKPAEFFIEKIVLDHNMIHSFLQELIEKIPENFQPR CCCCCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FKAVFQNLTGPLNPLYFREIIVDTLQQDRGLNIGKKSILSADELDSLLYSRLPYFSIYEL HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHH KEKIYQILILLPGITSSKADEILSYFDQISLSKSQYVMSANQLQDICKALICLSEMQTTF HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE SIDYHWHISFTCQKLGFAMPAPIIFADTNWVKDEFGFVVNPGTGRLELWRVDYTGSIGYP EEEEEEEEEEEHHHCCCCCCCCEEEECCCCCHHHCCEEECCCCCCEEEEEEEECCCCCCC MSIWKEWVNGTRTDLKWGIYIKPTEYGQV HHHHHHHHCCCCCCEEEEEEECCCCCCCC >Mature Secondary Structure MCEKVNKEKINTILSLVKAPLNHPFFYPRIFALIAKQKKQERLAADKICAYIVEEYEEIS CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLDRSQIQESCSVRNILRTGHLAALLIDDKGEINFAVLPTLIQKFKSHLYSLGPNRQYD HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCC SKRQEHILKVLQFLLTNKELVRSLKKISKPLSNKIAEDIIKQTLQIPSQTVITDAHAKRA HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHH VLAAWLCYLRQNVGSCFATAPAEIIQNEQPEQFLQDMTDLLATGRLKRTFGGAEYSVPIS HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEE ASWGSGDLKKPLLLSISSKKISPEIWYSPGLIVAFEAVGLLQKNEKLKDKIKRLKDWIDP CCCCCCCCCCCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IILQHSRHTNYCIVTAEVILRTILRQSIGLSEQQIKDYEERPRGMIQSNLMQIPAIGKQT HHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC GGIGEKCANFLYLFEIGKNAFKSLADNALLKTWEFTLASFSETKLEFTTWNLYASLGMGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCC HEQGGIGHCIQEQIQYKLDQANKLVQDAQYEYEMMYTHVKTLESRIRHASEKEAQWLKME CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH YQNRANELYFIQDQRDDAHQRASALVNLYESLYKIYLELFREYFQEVYDADMQEVLTGPF HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC DDSPAGFRLLYKHGRSNSSQWTRIKNQTDFIDSLTSFFVATEPQIASMLQNLGLEKDLGE CCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHH VVTAIVNHVKTKEFLETAFYRMAAAHRMPIPQNPLDHLDQIEKKPWVYTSGGTMNTLVSC HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHH YYRIEDKPQEGAKWVESEMELLVFFADTLKHIPRKQMEPYLEGRRQSMLIQSPTHAFLLK HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHEEECCCCEEEEC PNLTPFKDAWIGDEFTYTSVRDKFVKPAEFFIEKIVLDHNMIHSFLQELIEKIPENFQPR CCCCCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FKAVFQNLTGPLNPLYFREIIVDTLQQDRGLNIGKKSILSADELDSLLYSRLPYFSIYEL HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHH KEKIYQILILLPGITSSKADEILSYFDQISLSKSQYVMSANQLQDICKALICLSEMQTTF HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE SIDYHWHISFTCQKLGFAMPAPIIFADTNWVKDEFGFVVNPGTGRLELWRVDYTGSIGYP EEEEEEEEEEEHHHCCCCCCCCEEEECCCCCHHHCCEEECCCCCCEEEEEEEECCCCCCC MSIWKEWVNGTRTDLKWGIYIKPTEYGQV HHHHHHHHCCCCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA