| Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
|---|---|
| Accession | NC_005861 |
| Length | 2,414,465 |
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The map label for this gene is 46445638
Identifier: 46445638
GI number: 46445638
Start: 4428
End: 5840
Strand: Direct
Name: 46445638
Synonym: pc0004
Alternate gene names: NA
Gene position: 4428-5840 (Clockwise)
Preceding gene: 46445637
Following gene: 46445642
Centisome position: 0.18
GC content: 35.74
Gene sequence:
>1413_bases ATGCCTATTTTGATGGCAGCAGGGTTTACATCTGCGACTATCTTTGCTCAGCAACAAGAAACCTCTTTTGAGCGTCAATT AAATGAAAACGACGATCAATCTCTAAGAGAGTTTGTACAATCTAAAGACAATATTGATATAAAAAAGAAATCCAAGAATT TAGATATTAGTGGTGATATCCGCTTTGAATGGCGTACAATCCGAGAGAAAGGGGTTGCTTTATACGCGGATGACTCTAGT AAGTTTTATGAAGATTACAGAAGTTTACGTGGTGGTTCTCATGTCGATGCAAAAGGATTACCGATTTCTCATAATGACTT TGACGTTGAATTTAATTTCAAATTAAAATATTCGTTTGGCAGATCTTGGGCTCAAGCACACCTTCAATTTGACAATCCAG CTGGTTTAAGAGGACGTAACGATTGTTCTGGGAAATTCCCCATTTATAATAAACACGGAAGTGAAGTGATCAAATCGCTC CCTCGCAATATGCAATGTTGCGGAAAAGGAAGTGGAGAATCGAATTTGATTAACTTGAAACGTGCTTATATTGGTTATAA CGTTTATGCAGATGGTAAGCATCGATTTGATATGGAAATTGGACGCCGTAAATTAGATGATGTCTTTGATTCAGAAATCC AATTTTCTAGCCGCTTTGATGGTGTTTTATTGAAATTTGCAAGTGCAATCGATGAAGTGATGGATTGGTATTGGGAAGGA GCCGCTTTTGTGGTCGACGAAAGAGTCAATCATTTTGGCTATGTGACAGAAATTGGGATTTTAAATCTTTTTGATACAGG ATTGGATCTTCGTTATTCTTTTATTGATTGGAAAAAGACTGGAATCAATAGATGTCACGTTCATAATCCATTAGGAACTC AATTTACTAATTCTCAAATTAGTTTTGCTTACACGATTGAGCCTGAAATTTACTGTAAAAGAATTCCAGTAGAATTCTAT GGTGGTTTTTTAATCAACCATGCAGCAAAAGCAAAAGCAATTACTCATCATAAGAAAAAAAACTTAGCTGCTTATGGAGG AGTTTATATTGGGCAGGTACATAAAGAAGGTGACTGGGCTCTTGATATAGAATATATTTACGTACAAGCGCAAGCTGTTT CTGATTTTGATGTAGGAAGTATCGGACGTGGAAATCTTGTTAATGACGATTTTGCAGATTATATAGAAACTAGTCATTTG CCTTCTACAAGTGATTACTCTTCGCAAAATGGTTATTATTATCCTGCACGTGGTAATGCCAATTTTAAGGGTTGGAGATT TGAATTTTTATACGCCATTACAGATAACTTTTCTATCGACACAATCTATGAATTTAGTCGAGCAGAAGACAGTAGGATAG GTGGACGTCATAGTTATTCAGATTTTGAATTAGAGGCAATTTACGCTTTTTAA
Upstream 100 bases:
>100_bases TCAATTTCATAAATTTTCTTATAGAAAAAACTAATTGGAATCTTCGACTATATTCCTAAAAACATAAAATGGAGCCAATA TGAAACTTGTAAAGTATCTG
Downstream 100 bases:
>100_bases TGACCTAATTGTTTCAAAAACCTTTCCTTGAAGAGAGGTTTTTGAAATTTTTATTCTAAATCCTTCTCATTCTTTGCCGT AAGGCCACTTCCAATTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MPILMAAGFTSATIFAQQQETSFERQLNENDDQSLREFVQSKDNIDIKKKSKNLDISGDIRFEWRTIREKGVALYADDSS KFYEDYRSLRGGSHVDAKGLPISHNDFDVEFNFKLKYSFGRSWAQAHLQFDNPAGLRGRNDCSGKFPIYNKHGSEVIKSL PRNMQCCGKGSGESNLINLKRAYIGYNVYADGKHRFDMEIGRRKLDDVFDSEIQFSSRFDGVLLKFASAIDEVMDWYWEG AAFVVDERVNHFGYVTEIGILNLFDTGLDLRYSFIDWKKTGINRCHVHNPLGTQFTNSQISFAYTIEPEIYCKRIPVEFY GGFLINHAAKAKAITHHKKKNLAAYGGVYIGQVHKEGDWALDIEYIYVQAQAVSDFDVGSIGRGNLVNDDFADYIETSHL PSTSDYSSQNGYYYPARGNANFKGWRFEFLYAITDNFSIDTIYEFSRAEDSRIGGRHSYSDFELEAIYAF
Sequences:
>Translated_470_residues MPILMAAGFTSATIFAQQQETSFERQLNENDDQSLREFVQSKDNIDIKKKSKNLDISGDIRFEWRTIREKGVALYADDSS KFYEDYRSLRGGSHVDAKGLPISHNDFDVEFNFKLKYSFGRSWAQAHLQFDNPAGLRGRNDCSGKFPIYNKHGSEVIKSL PRNMQCCGKGSGESNLINLKRAYIGYNVYADGKHRFDMEIGRRKLDDVFDSEIQFSSRFDGVLLKFASAIDEVMDWYWEG AAFVVDERVNHFGYVTEIGILNLFDTGLDLRYSFIDWKKTGINRCHVHNPLGTQFTNSQISFAYTIEPEIYCKRIPVEFY GGFLINHAAKAKAITHHKKKNLAAYGGVYIGQVHKEGDWALDIEYIYVQAQAVSDFDVGSIGRGNLVNDDFADYIETSHL PSTSDYSSQNGYYYPARGNANFKGWRFEFLYAITDNFSIDTIYEFSRAEDSRIGGRHSYSDFELEAIYAF >Mature_469_residues PILMAAGFTSATIFAQQQETSFERQLNENDDQSLREFVQSKDNIDIKKKSKNLDISGDIRFEWRTIREKGVALYADDSSK FYEDYRSLRGGSHVDAKGLPISHNDFDVEFNFKLKYSFGRSWAQAHLQFDNPAGLRGRNDCSGKFPIYNKHGSEVIKSLP RNMQCCGKGSGESNLINLKRAYIGYNVYADGKHRFDMEIGRRKLDDVFDSEIQFSSRFDGVLLKFASAIDEVMDWYWEGA AFVVDERVNHFGYVTEIGILNLFDTGLDLRYSFIDWKKTGINRCHVHNPLGTQFTNSQISFAYTIEPEIYCKRIPVEFYG GFLINHAAKAKAITHHKKKNLAAYGGVYIGQVHKEGDWALDIEYIYVQAQAVSDFDVGSIGRGNLVNDDFADYIETSHLP STSDYSSQNGYYYPARGNANFKGWRFEFLYAITDNFSIDTIYEFSRAEDSRIGGRHSYSDFELEAIYAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53783; Mature: 53652
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPILMAAGFTSATIFAQQQETSFERQLNENDDQSLREFVQSKDNIDIKKKSKNLDISGDI CCEEEECCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCE RFEWRTIREKGVALYADDSSKFYEDYRSLRGGSHVDAKGLPISHNDFDVEFNFKLKYSFG EEEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC RSWAQAHLQFDNPAGLRGRNDCSGKFPIYNKHGSEVIKSLPRNMQCCGKGSGESNLINLK CCEEEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHCCCCCEECCCCCCCCCEEEEE RAYIGYNVYADGKHRFDMEIGRRKLDDVFDSEIQFSSRFDGVLLKFASAIDEVMDWYWEG EEEEEEEEEECCCEEECHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCC AAFVVDERVNHFGYVTEIGILNLFDTGLDLRYSFIDWKKTGINRCHVHNPLGTQFTNSQI EEEEEEHHHHHCCCHHHEEEEEEECCCCCEEEEEEEHHHCCCCEEEECCCCCCCCCCCEE SFAYTIEPEIYCKRIPVEFYGGFLINHAAKAKAITHHKKKNLAAYGGVYIGQVHKEGDWA EEEEEECCCEEEEECCHHHHCCEEEHHHHHHHHHHHHHHCCCHHHCCEEEEEEEECCCEE LDIEYIYVQAQAVSDFDVGSIGRGNLVNDDFADYIETSHLPSTSDYSSQNGYYYPARGNA EEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC NFKGWRFEFLYAITDNFSIDTIYEFSRAEDSRIGGRHSYSDFELEAIYAF CCCCEEEEEEEEEECCCCEEHEEEHHCCCCCCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure PILMAAGFTSATIFAQQQETSFERQLNENDDQSLREFVQSKDNIDIKKKSKNLDISGDI CEEEECCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCE RFEWRTIREKGVALYADDSSKFYEDYRSLRGGSHVDAKGLPISHNDFDVEFNFKLKYSFG EEEEEEECCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC RSWAQAHLQFDNPAGLRGRNDCSGKFPIYNKHGSEVIKSLPRNMQCCGKGSGESNLINLK CCEEEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHCCCCCEECCCCCCCCCEEEEE RAYIGYNVYADGKHRFDMEIGRRKLDDVFDSEIQFSSRFDGVLLKFASAIDEVMDWYWEG EEEEEEEEEECCCEEECHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCC AAFVVDERVNHFGYVTEIGILNLFDTGLDLRYSFIDWKKTGINRCHVHNPLGTQFTNSQI EEEEEEHHHHHCCCHHHEEEEEEECCCCCEEEEEEEHHHCCCCEEEECCCCCCCCCCCEE SFAYTIEPEIYCKRIPVEFYGGFLINHAAKAKAITHHKKKNLAAYGGVYIGQVHKEGDWA EEEEEECCCEEEEECCHHHHCCEEEHHHHHHHHHHHHHHCCCHHHCCEEEEEEEECCCEE LDIEYIYVQAQAVSDFDVGSIGRGNLVNDDFADYIETSHLPSTSDYSSQNGYYYPARGNA EEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC NFKGWRFEFLYAITDNFSIDTIYEFSRAEDSRIGGRHSYSDFELEAIYAF CCCCEEEEEEEEEECCCCEEHEEEHHCCCCCCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA