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The map label for this gene is yfcH [H]

Identifier: 45658923

GI number: 45658923

Start: 3788026

End: 3788940

Strand: Direct

Name: yfcH [H]

Synonym: LIC13100

Alternate gene names: 45658923

Gene position: 3788026-3788940 (Clockwise)

Preceding gene: 45658921

Following gene: 45658928

Centisome position: 88.56

GC content: 35.3

Gene sequence:

>915_bases
ATGAAAATAGGTATTGTAGGTGGCACTGGATTAATCGGCAGGAATCTTACATTTCGCTTATTAGAAATGGGATACTCTGT
AAAAATTTTAAGTAGATTTTCTAATATTCCTAAACTTCTTCAGAGCAAGAAAAATTTAGAAGTTGTCGAAGGAGATTTCC
CAAAATCGGAAAATCTAAAACATTTAGATGCGATTATAAATTTAGCCGGATCTCCTATCGCCGGAGTTAGATGGACAAAA
AAAGTGAAAGAAGAGATTCGTTTGTCTAGAGTGGGTTATACGGAAAGTTTAGTTTCCTCTATCTCTAAAATTACAGGAGC
CCTGCCCAAGGTATTAATTCAGGGATCTGCGATCGGCTATTACGGTTCTTATGATCATGATACAGAAAATTTTTCAGAAC
ATTCTTCTGCCGGTAAAGACTTTCTTTCGTCTTTATGCGTGGATTGGGAGAAAGCCGCTGAACCAGTTTCAAAACTTGGA
ATCAGATTAATTCAAGTTAGAACAGGAGTCGTTTTAAGTATTCAAGGAGGAGCTTTAAAAAGTATGCTCCCTTCTTTTCG
TTTAGGTTTAGGAGGGCCATTAGGTTCCGGAAATCAAATTCTTAGTTGGATTCACATCGACGATGCAGTTAATGCAATCA
TTCATTTATTAGAAAATCCTAATTCTTCTGGACCATTTAATTTAGTAGCACCGAATTCGGTAAGTAACGAAATTTTTTCG
AAAACTCTTGCATATATTTTAAAACGCCCTGCGTTTTTTAGAGTTCCTACTGCGATTTTAAAAGTTCTTTTTGAAGAAGG
TGCAGACGTAATTGTAAAAGGTCAAAGAGTAATTCCAAAAAAATTACAAAAGTCTGGATTTTCTTTTTTATATCCAGAAT
TAGAAACTGCGTTGCAGGATTTGTTACGATCGTAA

Upstream 100 bases:

>100_bases
AACTTTGGGCAACAGGCTTTTAGGAATCATAAGATCAAAAGTGTGGGAACTATCACAATGGGCAATCAGGATTTTGAATC
ACAACAAAAGGTAATTAAGT

Downstream 100 bases:

>100_bases
TTCTAACAATTCTGTCTCGTTTTCATGAGATTTTAAAATAAATCTCTAATTTATACTTAAAATTCAGGGCAAATCATAGA
GAGTTGTTGAAAAATAAATT

Product: sugar nucleotide epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKIGIVGGTGLIGRNLTFRLLEMGYSVKILSRFSNIPKLLQSKKNLEVVEGDFPKSENLKHLDAIINLAGSPIAGVRWTK
KVKEEIRLSRVGYTESLVSSISKITGALPKVLIQGSAIGYYGSYDHDTENFSEHSSAGKDFLSSLCVDWEKAAEPVSKLG
IRLIQVRTGVVLSIQGGALKSMLPSFRLGLGGPLGSGNQILSWIHIDDAVNAIIHLLENPNSSGPFNLVAPNSVSNEIFS
KTLAYILKRPAFFRVPTAILKVLFEEGADVIVKGQRVIPKKLQKSGFSFLYPELETALQDLLRS

Sequences:

>Translated_304_residues
MKIGIVGGTGLIGRNLTFRLLEMGYSVKILSRFSNIPKLLQSKKNLEVVEGDFPKSENLKHLDAIINLAGSPIAGVRWTK
KVKEEIRLSRVGYTESLVSSISKITGALPKVLIQGSAIGYYGSYDHDTENFSEHSSAGKDFLSSLCVDWEKAAEPVSKLG
IRLIQVRTGVVLSIQGGALKSMLPSFRLGLGGPLGSGNQILSWIHIDDAVNAIIHLLENPNSSGPFNLVAPNSVSNEIFS
KTLAYILKRPAFFRVPTAILKVLFEEGADVIVKGQRVIPKKLQKSGFSFLYPELETALQDLLRS
>Mature_304_residues
MKIGIVGGTGLIGRNLTFRLLEMGYSVKILSRFSNIPKLLQSKKNLEVVEGDFPKSENLKHLDAIINLAGSPIAGVRWTK
KVKEEIRLSRVGYTESLVSSISKITGALPKVLIQGSAIGYYGSYDHDTENFSEHSSAGKDFLSSLCVDWEKAAEPVSKLG
IRLIQVRTGVVLSIQGGALKSMLPSFRLGLGGPLGSGNQILSWIHIDDAVNAIIHLLENPNSSGPFNLVAPNSVSNEIFS
KTLAYILKRPAFFRVPTAILKVLFEEGADVIVKGQRVIPKKLQKSGFSFLYPELETALQDLLRS

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=306, Percent_Identity=35.9477124183007, Blast_Score=171, Evalue=8e-43,
Organism=Escherichia coli, GI1788642, Length=303, Percent_Identity=44.2244224422442, Blast_Score=242, Evalue=2e-65,
Organism=Drosophila melanogaster, GI28573846, Length=302, Percent_Identity=33.4437086092715, Blast_Score=160, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33147; Mature: 33147

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGIVGGTGLIGRNLTFRLLEMGYSVKILSRFSNIPKLLQSKKNLEVVEGDFPKSENLK
CEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH
HLDAIINLAGSPIAGVRWTKKVKEEIRLSRVGYTESLVSSISKITGALPKVLIQGSAIGY
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC
YGSYDHDTENFSEHSSAGKDFLSSLCVDWEKAAEPVSKLGIRLIQVRTGVVLSIQGGALK
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCEEEEECCCHHH
SMLPSFRLGLGGPLGSGNQILSWIHIDDAVNAIIHLLENPNSSGPFNLVAPNSVSNEIFS
HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH
KTLAYILKRPAFFRVPTAILKVLFEEGADVIVKGQRVIPKKLQKSGFSFLYPELETALQD
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEECHHHHHHHHH
LLRS
HHCC
>Mature Secondary Structure
MKIGIVGGTGLIGRNLTFRLLEMGYSVKILSRFSNIPKLLQSKKNLEVVEGDFPKSENLK
CEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH
HLDAIINLAGSPIAGVRWTKKVKEEIRLSRVGYTESLVSSISKITGALPKVLIQGSAIGY
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEC
YGSYDHDTENFSEHSSAGKDFLSSLCVDWEKAAEPVSKLGIRLIQVRTGVVLSIQGGALK
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCEEEEECCCHHH
SMLPSFRLGLGGPLGSGNQILSWIHIDDAVNAIIHLLENPNSSGPFNLVAPNSVSNEIFS
HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH
KTLAYILKRPAFFRVPTAILKVLFEEGADVIVKGQRVIPKKLQKSGFSFLYPELETALQD
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEECHHHHHHHHH
LLRS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]