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The map label for this gene is 45658768

Identifier: 45658768

GI number: 45658768

Start: 3569454

End: 3570050

Strand: Reverse

Name: 45658768

Synonym: LIC12940

Alternate gene names: NA

Gene position: 3570050-3569454 (Counterclockwise)

Preceding gene: 45658769

Following gene: 45658767

Centisome position: 83.47

GC content: 37.19

Gene sequence:

>597_bases
TTGTTGATCACTTTATTGATTTGTTTATTGACCTTTGGTATGAGCGTTTGGTGTTTTGCTTCCGAAGAGAAACTATATAA
GTTTATTCTAACCCCATATCGATTGGAGCGAAATAAAAATTACTACACTCTGTTTACTTCCGGCTTTATACACGCGGATT
GGATGCATCTGATTTTTAACATGGTTTCGTTTTATTCTTTTGGAAAAAATCTAGAAATGACAGTGGGACCAATCCGATTT
ATTCTTTTTTATTTAGGAACGATCTTGATTACGAGTGTAATTTCCTGGAGAAAAAATCTGGGTAATCCTCATTATTCTAC
GTTAGGCGCTTCGGGAGGCGTTTGTGGAGTGTTGTTTGCTACAATTCTTTTTTATCCGAGCCTTTCTCTTTATATGATGT
TTATACCAATTCCGATTCCGGGTGCGGTCTATGCGGTTTTGTATTTGATTTATACTTATTTTTCTTCTAAAAGCGGCGCT
GCAGATGGGATTAATCATGACGCTCATCTTTGGGGTGCTCTATGCGGGATTGCATTTGCTCTTTTGTTGGAACCTATGAT
CCTCAGCAGAGTTTTTCGGAATATTTTGGGAAATTAA

Upstream 100 bases:

>100_bases
CTAAGGAACTTGATTTTGAAAGAGCTGCAATTTTGAGGGATAAAATGTTATCGATTCAAACGGAAGATTCTTCAGCCAAA
AATTAAAAATAAGGAATGTA

Downstream 100 bases:

>100_bases
TCATAGTTTTGTTATTTCAAGTTTGTCCTTCAGAACTACATAATAAAGTACCTATTTAAAAGTTTACACTTTAATCATAT
GAATTCAGAGAAAGAAAAGC

Product: cytoplasmic membrane protein

Products: NA

Alternate protein names: Peptidase; S54 Family Peptidase; Transmembrane Rhomboid Family Protein; Rhomboid-Like Protein; Integral Membrane Protein; Membrane Serine Protease; Serine Protease; Cytoplasmic Membrane Protein; Subfamily; Intramembrane Protease

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLITLLICLLTFGMSVWCFASEEKLYKFILTPYRLERNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRF
ILFYLGTILITSVISWRKNLGNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVLYLIYTYFSSKSGA
ADGINHDAHLWGALCGIAFALLLEPMILSRVFRNILGN

Sequences:

>Translated_198_residues
MLITLLICLLTFGMSVWCFASEEKLYKFILTPYRLERNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRF
ILFYLGTILITSVISWRKNLGNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVLYLIYTYFSSKSGA
ADGINHDAHLWGALCGIAFALLLEPMILSRVFRNILGN
>Mature_198_residues
MLITLLICLLTFGMSVWCFASEEKLYKFILTPYRLERNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRF
ILFYLGTILITSVISWRKNLGNPHYSTLGASGGVCGVLFATILFYPSLSLYMMFIPIPIPGAVYAVLYLIYTYFSSKSGA
ADGINHDAHLWGALCGIAFALLLEPMILSRVFRNILGN

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22396; Mature: 22396

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITLLICLLTFGMSVWCFASEEKLYKFILTPYRLERNKNYYTLFTSGFIHADWMHLIFN
CHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
MVSFYSFGKNLEMTVGPIRFILFYLGTILITSVISWRKNLGNPHYSTLGASGGVCGVLFA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHH
TILFYPSLSLYMMFIPIPIPGAVYAVLYLIYTYFSSKSGAADGINHDAHLWGALCGIAFA
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
LLLEPMILSRVFRNILGN
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLITLLICLLTFGMSVWCFASEEKLYKFILTPYRLERNKNYYTLFTSGFIHADWMHLIFN
CHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
MVSFYSFGKNLEMTVGPIRFILFYLGTILITSVISWRKNLGNPHYSTLGASGGVCGVLFA
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHH
TILFYPSLSLYMMFIPIPIPGAVYAVLYLIYTYFSSKSGAADGINHDAHLWGALCGIAFA
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
LLLEPMILSRVFRNILGN
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA