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The map label for this gene is 45658744

Identifier: 45658744

GI number: 45658744

Start: 3539984

End: 3540904

Strand: Direct

Name: 45658744

Synonym: LIC12914

Alternate gene names: NA

Gene position: 3539984-3540904 (Clockwise)

Preceding gene: 45658743

Following gene: 45658745

Centisome position: 82.76

GC content: 39.63

Gene sequence:

>921_bases
ATGAGCAATCCAATTCAAAATCGGTACGAATTTGTCTATTTATTTGACGTGAAAGACGGAAATCCAAACGGAGATCCTGA
CGCTGGGAATCAACCCAGAGTAGATCCGGAAACCGGAAACGGCCTGATCACAGACGTTTCTTTAAAACGAAAAATAAGAA
ACTACGTGACTATCGTAAAAAGTGCAACTCCACCTAACGACATTTATATTAAGGAAAAAGCAGTCTTAATTGAAACTCAC
GAAAAAGCATATGTAGCAGTCGGCGCCAAATTAGAAACTTCCAAAAAAGAAGAAAAAGAAAAAAGAACCGGAGGAGACCA
AGTTGGCAAAGCGAGAGAATGGATGTGTAAAAACTTTTACGACGTGCGTACTTTTGGAGCTGTAATGGCGCTGAAAGTAA
ATGCCGGCGTAGTCAAAGGACCCATTCAGTTTACATTCGCTCGTAGTATCGATCCTGTTATCAATTTAGAACATAGTATC
ACTAGAATGGCGGTTGCAACCAAAAAAGAAGCTGAAGACCAGGACGGAGATAACAGAACGATGGGCCGTAAACATACAAT
TTCTTACGGGCTTTATCGCGCTCACGGTTTTATCTCTGCTCATTTTGCAAACGACACTGGTTTTTCCGAAGAAGATTTAG
AATTATTTTGGTCTTCCTTACAAAATATGTTCGATCATGATCGATCCGCTGCAAGAGGAGAAATGAATTGTAGAGGTTTA
TACGTATTCAAACACGTAGGAGACGGAAAAAACACCAATCAAGCAAAGTTAGGAGTTGCACCAGCACATAAACTTTTCAA
CTTAATTTCCGTATCTAAAAAAGACAATTCAACGCCTGCAAGAGATTTTTCCGATTATTCGGTCAAAATCCAGGAATCGG
ATTTACCAGCCGGAGTGGAATTAATCAAAAAAGTTTCCTAA

Upstream 100 bases:

>100_bases
CATTCAGTCTCGAAGAACAAGGGTTATTTGCAGTCGGCTATTATCACCAAAGAAACGAATTATTTAAGAAAAAAGAAGAA
CTATCACAAGGAGAATAAAA

Downstream 100 bases:

>100_bases
AAACAGGAGCTCGCAAAAACTATATTAATTTAGTTTATTTTTATATTTAAATATATCAATAAACTAAATTAATCTTTATT
TTAAATCAGAAAATAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Csh2 Family Protein; CRISPR-Associated Protein Csh2 Family; CRISPR-Associated Csd2 Family Protein; Csd2 Family CRISPR-Associated Protein; CRISPR-Associated Protein; Crispr-Associated Protein; Crispr-Protein; Cytoplasmic Protein; Csh2 Family CRISPR-Associated Protein; CRISPR-Associated RAMP Csd3 Family Protein; CRISPR-Associated RAMP Protein Cmr1 Family; CRISPR-Associated Protein TM; Cas2 Family CRISPR-Associated Protein; Csh Crispr-Associated Protein Csh2 Family; Crispr-Associated Protein Csh2 Family; CRISPR-Associated Protein Csd3 Family

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSNPIQNRYEFVYLFDVKDGNPNGDPDAGNQPRVDPETGNGLITDVSLKRKIRNYVTIVKSATPPNDIYIKEKAVLIETH
EKAYVAVGAKLETSKKEEKEKRTGGDQVGKAREWMCKNFYDVRTFGAVMALKVNAGVVKGPIQFTFARSIDPVINLEHSI
TRMAVATKKEAEDQDGDNRTMGRKHTISYGLYRAHGFISAHFANDTGFSEEDLELFWSSLQNMFDHDRSAARGEMNCRGL
YVFKHVGDGKNTNQAKLGVAPAHKLFNLISVSKKDNSTPARDFSDYSVKIQESDLPAGVELIKKVS

Sequences:

>Translated_306_residues
MSNPIQNRYEFVYLFDVKDGNPNGDPDAGNQPRVDPETGNGLITDVSLKRKIRNYVTIVKSATPPNDIYIKEKAVLIETH
EKAYVAVGAKLETSKKEEKEKRTGGDQVGKAREWMCKNFYDVRTFGAVMALKVNAGVVKGPIQFTFARSIDPVINLEHSI
TRMAVATKKEAEDQDGDNRTMGRKHTISYGLYRAHGFISAHFANDTGFSEEDLELFWSSLQNMFDHDRSAARGEMNCRGL
YVFKHVGDGKNTNQAKLGVAPAHKLFNLISVSKKDNSTPARDFSDYSVKIQESDLPAGVELIKKVS
>Mature_305_residues
SNPIQNRYEFVYLFDVKDGNPNGDPDAGNQPRVDPETGNGLITDVSLKRKIRNYVTIVKSATPPNDIYIKEKAVLIETHE
KAYVAVGAKLETSKKEEKEKRTGGDQVGKAREWMCKNFYDVRTFGAVMALKVNAGVVKGPIQFTFARSIDPVINLEHSIT
RMAVATKKEAEDQDGDNRTMGRKHTISYGLYRAHGFISAHFANDTGFSEEDLELFWSSLQNMFDHDRSAARGEMNCRGLY
VFKHVGDGKNTNQAKLGVAPAHKLFNLISVSKKDNSTPARDFSDYSVKIQESDLPAGVELIKKVS

Specific function: Unknown

COG id: COG3649

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34140; Mature: 34009

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPIQNRYEFVYLFDVKDGNPNGDPDAGNQPRVDPETGNGLITDVSLKRKIRNYVTIVK
CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHEEEE
SATPPNDIYIKEKAVLIETHEKAYVAVGAKLETSKKEEKEKRTGGDQVGKAREWMCKNFY
CCCCCCCEEEECEEEEEEECCCEEEEECCEECCCHHHHHHHHCCCHHHHHHHHHHHHCCH
DVRTFGAVMALKVNAGVVKGPIQFTFARSIDPVINLEHSITRMAVATKKEAEDQDGDNRT
HHHHHCEEEEEEECCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
MGRKHTISYGLYRAHGFISAHFANDTGFSEEDLELFWSSLQNMFDHDRSAARGEMNCRGL
CCCEEEHHHEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEE
YVFKHVGDGKNTNQAKLGVAPAHKLFNLISVSKKDNSTPARDFSDYSVKIQESDLPAGVE
EEEEEECCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHH
LIKKVS
HHHHCC
>Mature Secondary Structure 
SNPIQNRYEFVYLFDVKDGNPNGDPDAGNQPRVDPETGNGLITDVSLKRKIRNYVTIVK
CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHEEEE
SATPPNDIYIKEKAVLIETHEKAYVAVGAKLETSKKEEKEKRTGGDQVGKAREWMCKNFY
CCCCCCCEEEECEEEEEEECCCEEEEECCEECCCHHHHHHHHCCCHHHHHHHHHHHHCCH
DVRTFGAVMALKVNAGVVKGPIQFTFARSIDPVINLEHSITRMAVATKKEAEDQDGDNRT
HHHHHCEEEEEEECCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
MGRKHTISYGLYRAHGFISAHFANDTGFSEEDLELFWSSLQNMFDHDRSAARGEMNCRGL
CCCEEEHHHEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEE
YVFKHVGDGKNTNQAKLGVAPAHKLFNLISVSKKDNSTPARDFSDYSVKIQESDLPAGVE
EEEEEECCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHH
LIKKVS
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA