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The map label for this gene is 45658745

Identifier: 45658745

GI number: 45658745

Start: 3541044

End: 3541472

Strand: Direct

Name: 45658745

Synonym: LIC12915

Alternate gene names: NA

Gene position: 3541044-3541472 (Clockwise)

Preceding gene: 45658744

Following gene: 45658746

Centisome position: 82.79

GC content: 32.63

Gene sequence:

>429_bases
ATGTTTAGTAAATCAATAAAACTGTTTTTATACATTAGAGTTGTTGAATTCCCAAAAGAAAAACCTCCCTTCCCTATAGA
TTATAAAAACGGTCGCATATCAAAATGGACAAATCAAGAAGCCCAACTCTGTGCCGTTGCAATTTGTCTCGAAGAAATGC
TCGACGTAAAAATTCAATTTGGGGCGATCTATCACATACAATCTAAAAAGAGACACGATGTAGAATTTTCCGACTCACTT
AGAACACTTACCATTCAAACAATTGAGGAAATTAGAAAAATATTAAGAGATAAAATTCTTCCTCCTCCTGTTTCGAATCG
TTCACTTTGTAAAAATTGCAGTTTGTTTGATACATGTATGCCCAGCTCATATTCAGATTTAAATTTTAAAGAATACTTAT
TTAGGATAAAAGACTCTGGCGGATATTAA

Upstream 100 bases:

>100_bases
TTTATATTTAAATATATCAATAAACTAAATTAATCTTTATTTTAAATCAGAAAATAAAACATTAACCCAAACGCAAAATT
GTTTCAAAATTTATAACTGA

Downstream 100 bases:

>100_bases
ACAAAACATTCTATATATCACTCAAGAAGGTTTATATCTTCATCATGAGCTGGATGTTCTTAAAGTCAAAAAGGGAGATG
ATACTATTTTCAAAATTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Exonuclease Cas4 Family Protein; RecB Family Exonuclease; CRISPR-Associated Exonuclease Cas4 Family; Endonuclease; Exonuclease RecB Family Protein; CRISPR-Associated Cas1 Family Protein; Cas4 Family CRISPR-Associated Protein; Exonuclease N; RecB Family Exonuclease Protein

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MFSKSIKLFLYIRVVEFPKEKPPFPIDYKNGRISKWTNQEAQLCAVAICLEEMLDVKIQFGAIYHIQSKKRHDVEFSDSL
RTLTIQTIEEIRKILRDKILPPPVSNRSLCKNCSLFDTCMPSSYSDLNFKEYLFRIKDSGGY

Sequences:

>Translated_142_residues
MFSKSIKLFLYIRVVEFPKEKPPFPIDYKNGRISKWTNQEAQLCAVAICLEEMLDVKIQFGAIYHIQSKKRHDVEFSDSL
RTLTIQTIEEIRKILRDKILPPPVSNRSLCKNCSLFDTCMPSSYSDLNFKEYLFRIKDSGGY
>Mature_142_residues
MFSKSIKLFLYIRVVEFPKEKPPFPIDYKNGRISKWTNQEAQLCAVAICLEEMLDVKIQFGAIYHIQSKKRHDVEFSDSL
RTLTIQTIEEIRKILRDKILPPPVSNRSLCKNCSLFDTCMPSSYSDLNFKEYLFRIKDSGGY

Specific function: Unknown

COG id: COG1468

COG function: function code L; RecB family exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16607; Mature: 16607

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKSIKLFLYIRVVEFPKEKPPFPIDYKNGRISKWTNQEAQLCAVAICLEEMLDVKIQF
CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEC
GAIYHIQSKKRHDVEFSDSLRTLTIQTIEEIRKILRDKILPPPVSNRSLCKNCSLFDTCM
CEEEEECCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHCC
PSSYSDLNFKEYLFRIKDSGGY
CCCCCCCCHHHHHEECCCCCCC
>Mature Secondary Structure
MFSKSIKLFLYIRVVEFPKEKPPFPIDYKNGRISKWTNQEAQLCAVAICLEEMLDVKIQF
CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEC
GAIYHIQSKKRHDVEFSDSLRTLTIQTIEEIRKILRDKILPPPVSNRSLCKNCSLFDTCM
CEEEEECCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHCC
PSSYSDLNFKEYLFRIKDSGGY
CCCCCCCCHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA