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The map label for this gene is 45658742

Identifier: 45658742

GI number: 45658742

Start: 3537565

End: 3538269

Strand: Direct

Name: 45658742

Synonym: LIC12912

Alternate gene names: NA

Gene position: 3537565-3538269 (Clockwise)

Preceding gene: 45658741

Following gene: 45658743

Centisome position: 82.71

GC content: 37.16

Gene sequence:

>705_bases
ATGGAAACAAAAAGTATGAAGGAATCACAAATATTTCAATTAAAAGTCTCTGGAGAAAATGCGTGTTTTACTAGACCCGA
AATGAAGGCAGAAAGAGTCTCCTACGACGTGATCACTCCTTCCGCCGCTAGAGCCATTTTTGACGCAATCCTTTGGAAAC
CCGCAATTCTTTGGATCATCCATAAAATTGATATTCTAAAACCGATCCTCTGGGAGTCCATTCGTAGAAACGAATTAGGT
TCTAAAATTGCTCCTCAAAATATCATGCAAACGATGGAAGCGGGAACTGGTAATTTAGCTCTTTATATCGAAGAAGAAAG
ACAACAAAGAGCGGGACTGTTTCTTAAAGACGTATCTTATATCTTACACGCTAGTTTTAAACTCACCAAAAGAGCGAGAG
ATGGGGACAGTATTACAAAATTTGAAGAGATGTTTAAACGAAGAGCCGAAAAAGGACAATGTCATCATCAACCTTATTTT
GGTAGTCGAGAATTTGCCGCCTACTTCTCGTTAAACGATCAAACCGAAAAACCGATCAAGATAGAACAACAAGATTTAGG
TTGGATGTTATACGATCTTGATTTTGAAGACTATAATTTTGATACAAAAAGTTATAAGGACGCCAATCCAAAATTTTTTC
GAGCAGTAATCCAAAATGGTAGTATTGTAATTCCAGATTTGAATACCAATGGAGCGAGACTATGA

Upstream 100 bases:

>100_bases
CCGAAATCGAAGGAATTATAGGAATTTTAAATTTCGACTCTTATTATCATAATGATTTAGGAATATTAGAATCTCCGAAT
GATCAAGATTTAATCATTTA

Downstream 100 bases:

>100_bases
TCCTACAAGAATTAGTAAAATATTATGAACGAAAATTAGAAGAAAGGGAAATAGCGAGAGAAGGATTTGAAACAAAAGAA
ATTCCTTATTTGATCGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Csd1 Family Protein; CRISPR-Associated Cas5 Family Protein; CRISPR-Associated Dvulg Subtype; Cas5 Family CRISPR-Associated Protein; CRISPR-Associated Cas5d Family Protein; CRISPR-Associated RAMP Csd5d Family Protein; CRISPR-Associated D; CRISPR-Associated Protein Csd5d Family; CRISPR-Associated Protein; Crispr- Family

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
METKSMKESQIFQLKVSGENACFTRPEMKAERVSYDVITPSAARAIFDAILWKPAILWIIHKIDILKPILWESIRRNELG
SKIAPQNIMQTMEAGTGNLALYIEEERQQRAGLFLKDVSYILHASFKLTKRARDGDSITKFEEMFKRRAEKGQCHHQPYF
GSREFAAYFSLNDQTEKPIKIEQQDLGWMLYDLDFEDYNFDTKSYKDANPKFFRAVIQNGSIVIPDLNTNGARL

Sequences:

>Translated_234_residues
METKSMKESQIFQLKVSGENACFTRPEMKAERVSYDVITPSAARAIFDAILWKPAILWIIHKIDILKPILWESIRRNELG
SKIAPQNIMQTMEAGTGNLALYIEEERQQRAGLFLKDVSYILHASFKLTKRARDGDSITKFEEMFKRRAEKGQCHHQPYF
GSREFAAYFSLNDQTEKPIKIEQQDLGWMLYDLDFEDYNFDTKSYKDANPKFFRAVIQNGSIVIPDLNTNGARL
>Mature_234_residues
METKSMKESQIFQLKVSGENACFTRPEMKAERVSYDVITPSAARAIFDAILWKPAILWIIHKIDILKPILWESIRRNELG
SKIAPQNIMQTMEAGTGNLALYIEEERQQRAGLFLKDVSYILHASFKLTKRARDGDSITKFEEMFKRRAEKGQCHHQPYF
GSREFAAYFSLNDQTEKPIKIEQQDLGWMLYDLDFEDYNFDTKSYKDANPKFFRAVIQNGSIVIPDLNTNGARL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27128; Mature: 27128

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKSMKESQIFQLKVSGENACFTRPEMKAERVSYDVITPSAARAIFDAILWKPAILWII
CCCCCCCCCEEEEEEECCCCCEEECCCCHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHH
HKIDILKPILWESIRRNELGSKIAPQNIMQTMEAGTGNLALYIEEERQQRAGLFLKDVSY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHCCHHHHHHH
ILHASFKLTKRARDGDSITKFEEMFKRRAEKGQCHHQPYFGSREFAAYFSLNDQTEKPIK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCEE
IEQQDLGWMLYDLDFEDYNFDTKSYKDANPKFFRAVIQNGSIVIPDLNTNGARL
EECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCC
>Mature Secondary Structure
METKSMKESQIFQLKVSGENACFTRPEMKAERVSYDVITPSAARAIFDAILWKPAILWII
CCCCCCCCCEEEEEEECCCCCEEECCCCHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHH
HKIDILKPILWESIRRNELGSKIAPQNIMQTMEAGTGNLALYIEEERQQRAGLFLKDVSY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHCCHHHHHHH
ILHASFKLTKRARDGDSITKFEEMFKRRAEKGQCHHQPYFGSREFAAYFSLNDQTEKPIK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCEE
IEQQDLGWMLYDLDFEDYNFDTKSYKDANPKFFRAVIQNGSIVIPDLNTNGARL
EECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA