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The map label for this gene is 45658741

Identifier: 45658741

GI number: 45658741

Start: 3536462

End: 3537565

Strand: Direct

Name: 45658741

Synonym: LIC12911

Alternate gene names: NA

Gene position: 3536462-3537565 (Clockwise)

Preceding gene: 45658740

Following gene: 45658742

Centisome position: 82.68

GC content: 32.16

Gene sequence:

>1104_bases
ATGATTCCTCCCCAATTTTTACAACCAATCGTAAAAACCCTGAAAGAAATAGTAGAATTTTATAATGTAACAATAATCTT
ATGTACTGCCACCCAACCCACATTGTCTTCTATAAAATCCATTGACCTCAATTTTGATGGAATTAACAAAGCCATAGAAT
TGGCACCGGAACCGGAAAAACTTTTTCAAGAACTAAAACGAGTAATCATTCATAAACCGGAAGAGAGAAAGTTAAGTTTT
ATAGAAATTGCGACAAAAATTTCAAATTATGATCAGGTTTTAACGATCGTAAATCGTAAAAGTGACTCTAGTGGGATTTT
CAATCAACTGACCGGAAATAAATATTATCTAACTACAAACCTTTGTGCAGAACATCGCAGAGATATTCTTAAAAAAGTAA
AAAGTCATCTTAGCAATGGAGAATCGGTTTATTTAGTCAGCACTCAATTGATAGAAGCGGGAGTTGATATTGATTTTCCG
ATCGTTTTTAGAGCCGTTGCCGGACTCGATAGTATTGCCCAAACCGTCGGAAGATGTAACCGTGAGGGTAAATTAGTTGA
TGAAAACGGACAAGAAAAACTAGGAGAAGTATTTTTATTTCATCCACAACAAGATCCTCCTTCCGGACATCTTTTACAAA
CCAAACAAGCAAGTGAAGATTGTATAAAAAACTTTGAAGAATTAATCCATCCAGATACTTTAAAACAATACTTTAACACT
TTATTTTGGTTAAAACAAGATAAAGGATTAGATAAAGAAGAAATAGAAAAAGATAAAAGAAGCTTTCAATTCGAAACGAT
TAATAAAAATTTCAAACTAATCGACAAAGACTCTAGACCAGTCATTGTGCCTTACAAAGAAGGTAAAGATCTAATCGTTC
AATTACAAAACTCAGTCGTACAAAATAACTTTGTAGACTATAAGCTAATTCGAAAATCACAACGTTATACCGTAAATCTC
AAAACAAATCTATACAACAAACTTCTATCCGAGGGAATCATCTCCGAAATCGAAGGAATTATAGGAATTTTAAATTTCGA
CTCTTATTATCATAATGATTTAGGAATATTAGAATCTCCGAATGATCAAGATTTAATCATTTAA

Upstream 100 bases:

>100_bases
AAATGTTCAGTTATTTGAAAGTTTATTTTCTTCTAAAACTACAAAAGTCAGAAAACTTCATAATATTATAAATAGCGTAA
TCATATTGGATGAAGCTTAG

Downstream 100 bases:

>100_bases
TGGAAACAAAAAGTATGAAGGAATCACAAATATTTCAATTAAAAGTCTCTGGAGAAAATGCGTGTTTTACTAGACCCGAA
ATGAAGGCAGAAAGAGTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Helicase Cas3 Family Protein Protein; CRISPR-Associated Helicase Cas3 Domain Protein; Helicase; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; CRISPR-Associated Helicase Cas3 Core; CRISPR-Associated HD Domain Protein; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; CRISPR-Associated Helicase Cas3 Family; Helicases; Cas3 Family CRISPR-Associated Helicase; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MIPPQFLQPIVKTLKEIVEFYNVTIILCTATQPTLSSIKSIDLNFDGINKAIELAPEPEKLFQELKRVIIHKPEERKLSF
IEIATKISNYDQVLTIVNRKSDSSGIFNQLTGNKYYLTTNLCAEHRRDILKKVKSHLSNGESVYLVSTQLIEAGVDIDFP
IVFRAVAGLDSIAQTVGRCNREGKLVDENGQEKLGEVFLFHPQQDPPSGHLLQTKQASEDCIKNFEELIHPDTLKQYFNT
LFWLKQDKGLDKEEIEKDKRSFQFETINKNFKLIDKDSRPVIVPYKEGKDLIVQLQNSVVQNNFVDYKLIRKSQRYTVNL
KTNLYNKLLSEGIISEIEGIIGILNFDSYYHNDLGILESPNDQDLII

Sequences:

>Translated_367_residues
MIPPQFLQPIVKTLKEIVEFYNVTIILCTATQPTLSSIKSIDLNFDGINKAIELAPEPEKLFQELKRVIIHKPEERKLSF
IEIATKISNYDQVLTIVNRKSDSSGIFNQLTGNKYYLTTNLCAEHRRDILKKVKSHLSNGESVYLVSTQLIEAGVDIDFP
IVFRAVAGLDSIAQTVGRCNREGKLVDENGQEKLGEVFLFHPQQDPPSGHLLQTKQASEDCIKNFEELIHPDTLKQYFNT
LFWLKQDKGLDKEEIEKDKRSFQFETINKNFKLIDKDSRPVIVPYKEGKDLIVQLQNSVVQNNFVDYKLIRKSQRYTVNL
KTNLYNKLLSEGIISEIEGIIGILNFDSYYHNDLGILESPNDQDLII
>Mature_367_residues
MIPPQFLQPIVKTLKEIVEFYNVTIILCTATQPTLSSIKSIDLNFDGINKAIELAPEPEKLFQELKRVIIHKPEERKLSF
IEIATKISNYDQVLTIVNRKSDSSGIFNQLTGNKYYLTTNLCAEHRRDILKKVKSHLSNGESVYLVSTQLIEAGVDIDFP
IVFRAVAGLDSIAQTVGRCNREGKLVDENGQEKLGEVFLFHPQQDPPSGHLLQTKQASEDCIKNFEELIHPDTLKQYFNT
LFWLKQDKGLDKEEIEKDKRSFQFETINKNFKLIDKDSRPVIVPYKEGKDLIVQLQNSVVQNNFVDYKLIRKSQRYTVNL
KTNLYNKLLSEGIISEIEGIIGILNFDSYYHNDLGILESPNDQDLII

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42079; Mature: 42079

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPQFLQPIVKTLKEIVEFYNVTIILCTATQPTLSSIKSIDLNFDGINKAIELAPEPEK
CCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCCCCHHEECCCCHHH
LFQELKRVIIHKPEERKLSFIEIATKISNYDQVLTIVNRKSDSSGIFNQLTGNKYYLTTN
HHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHCCCCEEEEEHH
LCAEHRRDILKKVKSHLSNGESVYLVSTQLIEAGVDIDFPIVFRAVAGLDSIAQTVGRCN
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHCCC
REGKLVDENGQEKLGEVFLFHPQQDPPSGHLLQTKQASEDCIKNFEELIHPDTLKQYFNT
CCCCEECCCCHHHHCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCHHHHHHHHHH
LFWLKQDKGLDKEEIEKDKRSFQFETINKNFKLIDKDSRPVIVPYKEGKDLIVQLQNSVV
HHEEECCCCCCHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEECCCCHHHHHHHHHHH
QNNFVDYKLIRKSQRYTVNLKTNLYNKLLSEGIISEIEGIIGILNFDSYYHNDLGILESP
HCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCC
NDQDLII
CCCCCCC
>Mature Secondary Structure
MIPPQFLQPIVKTLKEIVEFYNVTIILCTATQPTLSSIKSIDLNFDGINKAIELAPEPEK
CCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHCCCCCCCCCHHEECCCCHHH
LFQELKRVIIHKPEERKLSFIEIATKISNYDQVLTIVNRKSDSSGIFNQLTGNKYYLTTN
HHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHCCCCEEEEEHH
LCAEHRRDILKKVKSHLSNGESVYLVSTQLIEAGVDIDFPIVFRAVAGLDSIAQTVGRCN
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHCCC
REGKLVDENGQEKLGEVFLFHPQQDPPSGHLLQTKQASEDCIKNFEELIHPDTLKQYFNT
CCCCEECCCCHHHHCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCHHHHHHHHHH
LFWLKQDKGLDKEEIEKDKRSFQFETINKNFKLIDKDSRPVIVPYKEGKDLIVQLQNSVV
HHEEECCCCCCHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEECCCCHHHHHHHHHHH
QNNFVDYKLIRKSQRYTVNLKTNLYNKLLSEGIISEIEGIIGILNFDSYYHNDLGILESP
HCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCC
NDQDLII
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA