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The map label for this gene is 45658740

Identifier: 45658740

GI number: 45658740

Start: 3535328

End: 3536461

Strand: Direct

Name: 45658740

Synonym: LIC12910

Alternate gene names: NA

Gene position: 3535328-3536461 (Clockwise)

Preceding gene: 45658739

Following gene: 45658741

Centisome position: 82.66

GC content: 32.8

Gene sequence:

>1134_bases
ATGAAAAGAAATAAACAATCCATTTTTATAGGACACATTCTTCGTAAAGATGACGGTAATTTCGTTGAACATCTCCTAGA
CGATCACCTCTATTCGGTAGCAGAGCTTACAGAAAAATTCTGTGAAAAATTTGGAGCAGGAACTTTTGGTTATCTAATAG
GTCTTTGGCATGATTTAGGAAAATTTAAATTAGAATTTCAAGAAAGAATTCGAATCCGTTCGGGACACATTGGAGAAGAA
GCCCATCTAGAAGGAAAAACTGCAAAGTCAGTAAAACACTCAGTCAGCGGAGCAATTCACTGTTTCAACAAATTTAAACA
AAGCGATATTATTAAAAAATTAATATGTTTGCCAATGCTTTGTCATCACTCCGGTCTAAAAAATTTTGGGATCGACGTAG
ATATTCAGCTAAACGAAGAAAGAGAAATTTTGGCGTTATCCGAAACCACTCCACACATCCCTCAAGAAATATTAGACGGA
ATCGATTTAAAACAACTCGGTAAAAGTTTTAAAGATCATTCCCTATTGATTCGAATGTTATTCTCCGCCTTAATCGACGC
GGACAGACTAGACACAGAAAGATTTATGGATCCAGCCAAATTCAAGGAAAGATATTCAAAAACTATAATCCTACAAGATT
TAAATATCAAATTAGACAAACACCTGAAAAACATACAAAAACAAGCAGATACTACAAAAGTAAATTCAATCAGAAAAAGA
ATCTTAGAAGAAGTTCAATCAAAAACAAATCTAAAACCCGGATTTTATACTTTAACCGTTCCTACCGGAGGAGGCAAAAC
GTTAACTTCTTTATCGTTTGCTTTAAAACATTGTATTACAAACAAAATGGATCGAGTGATCTACGGCGTTCCTTATTTAA
GTATCATAGAACAAACTACAGACGTATTTAAAAAAATATTGGGGGAAGATTCCGTTTTAGAACATCATTCGGGTATAGAC
ATTTCCAAGGAAAAAGAAAATTCTATAAATAGACTTTTAACCGAAAACTGGGATCATCCTTTAATTGTAACCACAAATGT
TCAGTTATTTGAAAGTTTATTTTCTTCTAAAACTACAAAAGTCAGAAAACTTCATAATATTATAAATAGCGTAATCATAT
TGGATGAAGCTTAG

Upstream 100 bases:

>100_bases
TTTAAAATTTTTATTTTAAAAAAATCATTTTATTTAAAAAAAATTTCAACTTCTTTCCGAAATTCTATATAACATTTTTA
ACCATTCTCCAAAACTAGGA

Downstream 100 bases:

>100_bases
ATGATTCCTCCCCAATTTTTACAACCAATCGTAAAAACCCTGAAAGAAATAGTAGAATTTTATAATGTAACAATAATCTT
ATGTACTGCCACCCAACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein; CRISPR-Associated Helicase Cas3 Domain Protein; CRISPR-Associated HD Domain Protein; ATP-Dependent RNA Helicase; CRISPR-Associated Helicase; CRISPR-Associated Helicase Cas3 Domain-Containing Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; Crispr-Associated Helicase Cas3 Domain Protein; Crispr-Associated Hd Domain Protein; Helicases; CRISPR-Associated Helicase Cas3 Core; CRISPR-Associated Helicase Cas3 Family; Helicase-Like Protein; Cas3 Family CRISPR-Associated Helicase; Helicases-Like Protein; CRISPR-Associated Helicase Cas3 Protein; CRISPR-Associated HD Domain-Containing Protein; ATP-Dependent RNA Helicase SrmB

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKRNKQSIFIGHILRKDDGNFVEHLLDDHLYSVAELTEKFCEKFGAGTFGYLIGLWHDLGKFKLEFQERIRIRSGHIGEE
AHLEGKTAKSVKHSVSGAIHCFNKFKQSDIIKKLICLPMLCHHSGLKNFGIDVDIQLNEEREILALSETTPHIPQEILDG
IDLKQLGKSFKDHSLLIRMLFSALIDADRLDTERFMDPAKFKERYSKTIILQDLNIKLDKHLKNIQKQADTTKVNSIRKR
ILEEVQSKTNLKPGFYTLTVPTGGGKTLTSLSFALKHCITNKMDRVIYGVPYLSIIEQTTDVFKKILGEDSVLEHHSGID
ISKEKENSINRLLTENWDHPLIVTTNVQLFESLFSSKTTKVRKLHNIINSVIILDEA

Sequences:

>Translated_377_residues
MKRNKQSIFIGHILRKDDGNFVEHLLDDHLYSVAELTEKFCEKFGAGTFGYLIGLWHDLGKFKLEFQERIRIRSGHIGEE
AHLEGKTAKSVKHSVSGAIHCFNKFKQSDIIKKLICLPMLCHHSGLKNFGIDVDIQLNEEREILALSETTPHIPQEILDG
IDLKQLGKSFKDHSLLIRMLFSALIDADRLDTERFMDPAKFKERYSKTIILQDLNIKLDKHLKNIQKQADTTKVNSIRKR
ILEEVQSKTNLKPGFYTLTVPTGGGKTLTSLSFALKHCITNKMDRVIYGVPYLSIIEQTTDVFKKILGEDSVLEHHSGID
ISKEKENSINRLLTENWDHPLIVTTNVQLFESLFSSKTTKVRKLHNIINSVIILDEA
>Mature_377_residues
MKRNKQSIFIGHILRKDDGNFVEHLLDDHLYSVAELTEKFCEKFGAGTFGYLIGLWHDLGKFKLEFQERIRIRSGHIGEE
AHLEGKTAKSVKHSVSGAIHCFNKFKQSDIIKKLICLPMLCHHSGLKNFGIDVDIQLNEEREILALSETTPHIPQEILDG
IDLKQLGKSFKDHSLLIRMLFSALIDADRLDTERFMDPAKFKERYSKTIILQDLNIKLDKHLKNIQKQADTTKVNSIRKR
ILEEVQSKTNLKPGFYTLTVPTGGGKTLTSLSFALKHCITNKMDRVIYGVPYLSIIEQTTDVFKKILGEDSVLEHHSGID
ISKEKENSINRLLTENWDHPLIVTTNVQLFESLFSSKTTKVRKLHNIINSVIILDEA

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43083; Mature: 43083

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNKQSIFIGHILRKDDGNFVEHLLDDHLYSVAELTEKFCEKFGAGTFGYLIGLWHDLG
CCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KFKLEFQERIRIRSGHIGEEAHLEGKTAKSVKHSVSGAIHCFNKFKQSDIIKKLICLPML
HHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CHHSGLKNFGIDVDIQLNEEREILALSETTPHIPQEILDGIDLKQLGKSFKDHSLLIRML
HHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
FSALIDADRLDTERFMDPAKFKERYSKTIILQDLNIKLDKHLKNIQKQADTTKVNSIRKR
HHHHHCHHHCCHHHCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ILEEVQSKTNLKPGFYTLTVPTGGGKTLTSLSFALKHCITNKMDRVIYGVPYLSIIEQTT
HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DVFKKILGEDSVLEHHSGIDISKEKENSINRLLTENWDHPLIVTTNVQLFESLFSSKTTK
HHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH
VRKLHNIINSVIILDEA
HHHHHHHHHHHEEEECC
>Mature Secondary Structure
MKRNKQSIFIGHILRKDDGNFVEHLLDDHLYSVAELTEKFCEKFGAGTFGYLIGLWHDLG
CCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KFKLEFQERIRIRSGHIGEEAHLEGKTAKSVKHSVSGAIHCFNKFKQSDIIKKLICLPML
HHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CHHSGLKNFGIDVDIQLNEEREILALSETTPHIPQEILDGIDLKQLGKSFKDHSLLIRML
HHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
FSALIDADRLDTERFMDPAKFKERYSKTIILQDLNIKLDKHLKNIQKQADTTKVNSIRKR
HHHHHCHHHCCHHHCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
ILEEVQSKTNLKPGFYTLTVPTGGGKTLTSLSFALKHCITNKMDRVIYGVPYLSIIEQTT
HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DVFKKILGEDSVLEHHSGIDISKEKENSINRLLTENWDHPLIVTTNVQLFESLFSSKTTK
HHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH
VRKLHNIINSVIILDEA
HHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA