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The map label for this gene is 45658600

Identifier: 45658600

GI number: 45658600

Start: 3372331

End: 3372735

Strand: Reverse

Name: 45658600

Synonym: LIC12766

Alternate gene names: NA

Gene position: 3372735-3372331 (Counterclockwise)

Preceding gene: 45658601

Following gene: 45658598

Centisome position: 78.85

GC content: 38.02

Gene sequence:

>405_bases
ATGGAAACTAAACCCAATTCGATGAGCCACAAAAATAACGAGATGAAAATTTCGATTGAAAATATTTCTTCCTCTGGAAC
TCTTCCAGGTCCCGCTGTTATCATCCAGGTCCAAGGAGACATCAATTTATTTTCTGCAAAAGAACTAAAAGATACTTTTA
ATGAACTGATTGAAAAAAAGATTTATCTTCTTCTCGTAGATCTTTCGGGTGTGCGTACTATGGATTCTTCTGGAATTGCC
ACCTTTATCGGAGCCCAGAATCGATTAAATAAGATTCCTTGCGCTGGACTTGCTCTTTATTCGTTACCACAACAGATAGA
AAAAATGCTCGAGCTGACTAGGCTCAAAGCTCTTTTTCGCACTGCTCCTGATCTTTCCGAAGCAATTCGAATTTTCAGTA
TTTAA

Upstream 100 bases:

>100_bases
TTTGATTCTTTTACAGTTCATAAAAAAATTATTTCTCATTTGTTATTGAATTTATGGATTGATATGGATAATAGGTTCCA
GACTTTCTCGGAGATGGATT

Downstream 100 bases:

>100_bases
TTTACACTTGTCTCAAAATTACAAATAGAACTTAACGTGAGCTCGGTCATGATTCATTTTTCTGAAAAAAGTTGTGAAAT
GAATTCTTAAAATGTGAGAA

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKKIYLLLVDLSGVRTMDSSGIA
TFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFRTAPDLSEAIRIFSI

Sequences:

>Translated_134_residues
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKKIYLLLVDLSGVRTMDSSGIA
TFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFRTAPDLSEAIRIFSI
>Mature_134_residues
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKKIYLLLVDLSGVRTMDSSGIA
TFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFRTAPDLSEAIRIFSI

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14810; Mature: 14810

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKK
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHH
IYLLLVDLSGVRTMDSSGIATFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFR
EEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TAPDLSEAIRIFSI
CCCCHHHHHHHHCC
>Mature Secondary Structure
METKPNSMSHKNNEMKISIENISSSGTLPGPAVIIQVQGDINLFSAKELKDTFNELIEKK
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHH
IYLLLVDLSGVRTMDSSGIATFIGAQNRLNKIPCAGLALYSLPQQIEKMLELTRLKALFR
EEEEEEECCCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TAPDLSEAIRIFSI
CCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA