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The map label for this gene is 45658386

Identifier: 45658386

GI number: 45658386

Start: 3082823

End: 3083938

Strand: Reverse

Name: 45658386

Synonym: LIC12544

Alternate gene names: NA

Gene position: 3083938-3082823 (Counterclockwise)

Preceding gene: 45658387

Following gene: 45658385

Centisome position: 72.1

GC content: 37.99

Gene sequence:

>1116_bases
TTGAATCAAAAAAGAGTTGGGCAGATTCTCCGTGAGGCGAGAGAAGAAAAAAAACTAAGTGTCAAGGACGTTGCTAGAGA
AACTAATATTTCCGTAAAATACATTTTGGCTTTAGAAACCGAAGACTATTCTCAGTTTCCGGGAGAAACCTTTACCATGG
GATTTTTGAAAAACTACGGAGGTTATCTAAAATTAGATACAGGACAGTTGATCAATTTATACAGAGGAGAAAAGATAGAA
GAATCCCAAGCGCCTCTCGAAGAACTGACTCGTCCTACCGCTTCGTATTATACGAAAATTAACGTGGATAAAAATAAAAT
TTTTACGATCGCGTCTGTATTGATCATTCTTATATCCGCGTATCTTATCATTGATAGTTTTATCGGTCCTTCTTCCGATG
AAGACTCAGTGGAAGAATCCGGTAAAAAACTAGATATTCCAGAAAACATAGATTTTCTTTCTAGATCCATTCCGGAAAGC
AGAAGTGAATCCTTCATTCTTACTCCGGATAAAGGAGTCAGTTTTTCGGTAAGCAATCAACAGTGTAAACTATTTATAGA
TTCTGTGGAAAAAGGAGGCGCTGTCAACACCGCTGTACTTGCGTTTAACGTTTATCCAGAACTTACGGTATATAAATTTC
GTTTGAGTGAAGGACAGGAAAAAATACTCAGTTATACAATTCCGGAAATTTCCAGTCTTAGGAGGAATGTTAGAATTATC
TCCCAGGCGGTGACTGAAAATTCGGCAAAGGTTTTAGTCACGTTGAGCGACGAAGAACAAAAACAGGAAAATAATAACTC
AGTTGATAACACAAAAACGTTAGGCGATGTTCCGATTCAAGTAACTCTATTTTTTAATAAACCTAGTTATGCTGAGTTCA
TCATAGACGGTCAGATGGGATTTAGAGGTCTTGTACAAACGGGAGAAACCAGAAGTTTAGAAGCTAAGGATCGTCTGGAA
CTAAAAGTAGGAGACGGTTCTGCGGTGGAGATGATTCAAAACGGTAAACCTAAAATCACTTTGGGACGCCCTGGTAAACT
AGTGAAGAAAATTTTTGTGAAAACTCAAAATCCTTATGATAGCACACAGTCCATCATCAAGGAGTTGGGAGAATAG

Upstream 100 bases:

>100_bases
TTTGGAAGACGGACAATTTAACTTTCATATCGGTGGAAACGCAAAAATTATAAATAACCCGCTTGTGTCGGAACAATAGG
TCCCGAAAAGGAGAGAAACG

Downstream 100 bases:

>100_bases
GAATTTTTTTGGATAAGAAGTTCTACATCACCACACTCGGTTGTCCTAAAAATATTGCGGACTCTATGAGTATGCATCAT
TCTCTTCTGGAAGAAGGGTT

Product: DNA binding protein

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYGGYLKLDTGQLINLYRGEKIE
ESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISAYLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPES
RSESFILTPDKGVSFSVSNQQCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRII
SQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMGFRGLVQTGETRSLEAKDRLE
LKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYDSTQSIIKELGE

Sequences:

>Translated_371_residues
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYGGYLKLDTGQLINLYRGEKIE
ESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISAYLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPES
RSESFILTPDKGVSFSVSNQQCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRII
SQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMGFRGLVQTGETRSLEAKDRLE
LKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYDSTQSIIKELGE
>Mature_371_residues
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYGGYLKLDTGQLINLYRGEKIE
ESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISAYLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPES
RSESFILTPDKGVSFSVSNQQCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRII
SQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMGFRGLVQTGETRSLEAKDRLE
LKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYDSTQSIIKELGE

Specific function: Unknown

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41530; Mature: 41530

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYG
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEEECCCHHHCCCCEEEHHHHHHCC
GYLKLDTGQLINLYRGEKIEESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISA
CEEEECCCHHHHHHCCCCCCHHCCCHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHH
YLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPESRSESFILTPDKGVSFSVSNQ
HHHHHHHCCCCCCCHHHHHCCCEECCCCCHHHHHHCCCCCCCCCEEEECCCCCEEEECCC
QCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRII
EEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHH
SQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMG
HHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
FRGLVQTGETRSLEAKDRLELKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYD
CHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCH
STQSIIKELGE
HHHHHHHHHCC
>Mature Secondary Structure
MNQKRVGQILREAREEKKLSVKDVARETNISVKYILALETEDYSQFPGETFTMGFLKNYG
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEEECCCHHHCCCCEEEHHHHHHCC
GYLKLDTGQLINLYRGEKIEESQAPLEELTRPTASYYTKINVDKNKIFTIASVLIILISA
CEEEECCCHHHHHHCCCCCCHHCCCHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHHHHH
YLIIDSFIGPSSDEDSVEESGKKLDIPENIDFLSRSIPESRSESFILTPDKGVSFSVSNQ
HHHHHHHCCCCCCCHHHHHCCCEECCCCCHHHHHHCCCCCCCCCEEEECCCCCEEEECCC
QCKLFIDSVEKGGAVNTAVLAFNVYPELTVYKFRLSEGQEKILSYTIPEISSLRRNVRII
EEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHH
SQAVTENSAKVLVTLSDEEQKQENNNSVDNTKTLGDVPIQVTLFFNKPSYAEFIIDGQMG
HHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
FRGLVQTGETRSLEAKDRLELKVGDGSAVEMIQNGKPKITLGRPGKLVKKIFVKTQNPYD
CHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCH
STQSIIKELGE
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA