Click here to switch to the map view.

The map label for this gene is scpA

Identifier: 45658296

GI number: 45658296

Start: 2970723

End: 2971508

Strand: Reverse

Name: scpA

Synonym: LIC12453

Alternate gene names: 45658296

Gene position: 2971508-2970723 (Counterclockwise)

Preceding gene: 45658297

Following gene: 45658295

Centisome position: 69.47

GC content: 38.55

Gene sequence:

>786_bases
ATGGAGAATGAAGAATCCGGTAAGTCCTTTGTAGTTCAATGGAACAATTCGGAAGGAGGTTTATCAGAAGGTCCTTTATC
CGTCCTTTGGAGTTTGATTGAAAGTTACAAGGTAGACATCTTTGATGTTTCTCTCTCTCGCATCACCCGGGATTTTTTAA
GTTTTCTTAGAATTTCAGAAACTCTTTCTTTGGAACTCAGCGCAGAATACGCCTTAATGGCCGCTAATTTAATCTATCTA
AAATCTAAAGCTTTATTACCAGACCCAGGATTTGAAGAGGAAGACTATGAACCTCCGCTTCCCCCTGAACTTGTAGAAAA
ACTTTTAGAACATAAAAAGTTTCAACTTACTGCCAAAAAACTTTCGGAAATGGATCAGACTCAGACAGGAGTTTTTAGAA
GAGAATCTAACGTTACCTTGGATGAAGAAGACAATTGGCTGGATGTTTCTCTTTTAGATCTGATTTCTGCATTTCATGAA
ATTTTAGAATCTCAATCGGTAGAGGCGGAAATTCCTACCTTACTTACCGCGCCTCATCGTTTTACCGTAGAAGAAAAAAT
GGAAAAAATACTTTTCACTCTTAGGGAAAAAAAAGAAATCTCTTTTCCGGAATTATTCGAACGAGAAAAACCGGAAAAAG
CAGAAATCGTTGCCACTTTTCTGGCATTGCTGGAACTAAGTAAGCAGAGGATTTTACGCGCCAAACAACACAAACTGTTT
GGAGAGATCCGTTTATTTCTGGTAGAGGGACATTGGAACGGGACAGAACAGCAATCAAAGGATTGA

Upstream 100 bases:

>100_bases
AAATGGGCGTTAAGGATTTTGTAGTAAAACCTTTTTCTCCAGAAAGATTGCAACAAGCTGCGGATAAGGCGCTCAACTCG
TAAAGGTAGATTTCTTTTGA

Downstream 100 bases:

>100_bases
TCGAGGCCTTATTATTCGTTTCCGGTGAACCTCTAAAGTTGGCTAGCATTGCCAAATCTGCGGAAATCGAAAAAACAGAA
GCTCGTGAAATTTTAGACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MENEESGKSFVVQWNNSEGGLSEGPLSVLWSLIESYKVDIFDVSLSRITRDFLSFLRISETLSLELSAEYALMAANLIYL
KSKALLPDPGFEEEDYEPPLPPELVEKLLEHKKFQLTAKKLSEMDQTQTGVFRRESNVTLDEEDNWLDVSLLDLISAFHE
ILESQSVEAEIPTLLTAPHRFTVEEKMEKILFTLREKKEISFPELFEREKPEKAEIVATFLALLELSKQRILRAKQHKLF
GEIRLFLVEGHWNGTEQQSKD

Sequences:

>Translated_261_residues
MENEESGKSFVVQWNNSEGGLSEGPLSVLWSLIESYKVDIFDVSLSRITRDFLSFLRISETLSLELSAEYALMAANLIYL
KSKALLPDPGFEEEDYEPPLPPELVEKLLEHKKFQLTAKKLSEMDQTQTGVFRRESNVTLDEEDNWLDVSLLDLISAFHE
ILESQSVEAEIPTLLTAPHRFTVEEKMEKILFTLREKKEISFPELFEREKPEKAEIVATFLALLELSKQRILRAKQHKLF
GEIRLFLVEGHWNGTEQQSKD
>Mature_261_residues
MENEESGKSFVVQWNNSEGGLSEGPLSVLWSLIESYKVDIFDVSLSRITRDFLSFLRISETLSLELSAEYALMAANLIYL
KSKALLPDPGFEEEDYEPPLPPELVEKLLEHKKFQLTAKKLSEMDQTQTGVFRRESNVTLDEEDNWLDVSLLDLISAFHE
ILESQSVEAEIPTLLTAPHRFTVEEKMEKILFTLREKKEISFPELFEREKPEKAEIVATFLALLELSKQRILRAKQHKLF
GEIRLFLVEGHWNGTEQQSKD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPA_LEPIC (Q72PL7)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_002382.1
- GeneID:   2771581
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC12453
- HOGENOM:   HBG728383
- OMA:   IRKQNID
- ProtClustDB:   CLSK573835
- BioCyc:   LINT267671:LIC_12453-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01805
- InterPro:   IPR003768

Pfam domain/function: PF02616 ScpA_ScpB

EC number: NA

Molecular weight: Translated: 30120; Mature: 30120

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENEESGKSFVVQWNNSEGGLSEGPLSVLWSLIESYKVDIFDVSLSRITRDFLSFLRISE
CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
TLSLELSAEYALMAANLIYLKSKALLPDPGFEEEDYEPPLPPELVEKLLEHKKFQLTAKK
HHEEEECHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LSEMDQTQTGVFRRESNVTLDEEDNWLDVSLLDLISAFHEILESQSVEAEIPTLLTAPHR
HHHHHHHHHHHEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
FTVEEKMEKILFTLREKKEISFPELFEREKPEKAEIVATFLALLELSKQRILRAKQHKLF
CCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEIRLFLVEGHWNGTEQQSKD
EEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MENEESGKSFVVQWNNSEGGLSEGPLSVLWSLIESYKVDIFDVSLSRITRDFLSFLRISE
CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
TLSLELSAEYALMAANLIYLKSKALLPDPGFEEEDYEPPLPPELVEKLLEHKKFQLTAKK
HHEEEECHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LSEMDQTQTGVFRRESNVTLDEEDNWLDVSLLDLISAFHEILESQSVEAEIPTLLTAPHR
HHHHHHHHHHHEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
FTVEEKMEKILFTLREKKEISFPELFEREKPEKAEIVATFLALLELSKQRILRAKQHKLF
CCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEIRLFLVEGHWNGTEQQSKD
EEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA