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The map label for this gene is scpB [H]

Identifier: 45658295

GI number: 45658295

Start: 2970193

End: 2970756

Strand: Reverse

Name: scpB [H]

Synonym: LIC12452

Alternate gene names: 45658295

Gene position: 2970756-2970193 (Counterclockwise)

Preceding gene: 45658296

Following gene: 45658294

Centisome position: 69.46

GC content: 39.01

Gene sequence:

>564_bases
TTGGAACGGGACAGAACAGCAATCAAAGGATTGATCGAGGCCTTATTATTCGTTTCCGGTGAACCTCTAAAGTTGGCTAG
CATTGCCAAATCTGCGGAAATCGAAAAAACAGAAGCTCGTGAAATTTTAGACGAACTCATTTTAGATTATTCTGAAAAGA
ACGGTGGATTTTTACTGAAAGAAATCGCCGGGGCTTACCAGTTTGTAACTAACGAAGGTTTTGCGGAACTACTCGGAAAT
ATTTTTAAAGAAAAAAGAAGAGAACAACTTTCCAAGTCTAGTTTAGATACACTTGCTATCATTGCTTACAAACAACCGAT
TACACTTCCAGAAATAGACGAAATCCGAGGAGTTTCTTCCCGGGCTATGGTCACGTCTCTTATTTCTAAAAAGCTAATCA
AACCGGTCGGAAACAAAGAAGTTCCTGGAAGACCCGCCTTGTATGGAACTACGAAAGAGTTCTTGATTCATTTTGGATTG
AATAAACTATCGGATCTTCCTGCTCCTGTGGAAGTAAAAGAATTGAAATTCGAAAATTTGGATGATCTACTCGAAGATGA
GTGA

Upstream 100 bases:

>100_bases
CCACTTTTCTGGCATTGCTGGAACTAAGTAAGCAGAGGATTTTACGCGCCAAACAACACAAACTGTTTGGAGAGATCCGT
TTATTTCTGGTAGAGGGACA

Downstream 100 bases:

>100_bases
TTTAGATCAGCAATTAAAAATCTTTAGAGATCAGATCGATTCTTTGGATCGAGAAATCGTAAAGTCTATCCAGACTCGTG
CAGAGTTTGCGTCTAAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MERDRTAIKGLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFVTNEGFAELLGN
IFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPVGNKEVPGRPALYGTTKEFLIHFGL
NKLSDLPAPVEVKELKFENLDDLLEDE

Sequences:

>Translated_187_residues
MERDRTAIKGLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFVTNEGFAELLGN
IFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPVGNKEVPGRPALYGTTKEFLIHFGL
NKLSDLPAPVEVKELKFENLDDLLEDE
>Mature_187_residues
MERDRTAIKGLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLKEIAGAYQFVTNEGFAELLGN
IFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPVGNKEVPGRPALYGTTKEFLIHFGL
NKLSDLPAPVEVKELKFENLDDLLEDE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 20848; Mature: 20848

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERDRTAIKGLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLK
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
EIAGAYQFVTNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCHH
RAMVTSLISKKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPVEVKELKFENL
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCH
DDLLEDE
HHHHCCC
>Mature Secondary Structure
MERDRTAIKGLIEALLFVSGEPLKLASIAKSAEIEKTEAREILDELILDYSEKNGGFLLK
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
EIAGAYQFVTNEGFAELLGNIFKEKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCHH
RAMVTSLISKKLIKPVGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPVEVKELKFENL
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCH
DDLLEDE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA