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The map label for this gene is 45658276

Identifier: 45658276

GI number: 45658276

Start: 2950361

End: 2951116

Strand: Reverse

Name: 45658276

Synonym: LIC12431

Alternate gene names: NA

Gene position: 2951116-2950361 (Counterclockwise)

Preceding gene: 45658277

Following gene: 45658275

Centisome position: 69.0

GC content: 36.64

Gene sequence:

>756_bases
ATGGACTCACCAAATCAAGAAATGCATGAAAGTATCGAGCTGGATTCAAAATGGCCCGAAGGACAAAAGAAAATCTTTTT
GGCGGCGATTGAAATTTTTGCCCAAAAAGGTTTTTCCGCAGCAACCACGATAGAAATTTCTAAAAAAGCAGGCGTTGCGG
AAGGACTGATTTTTAAACACTTTAAAAGTAAAAAGGAACTTCTTTTAAGATTAGTTTCTCCTATTTTAGAAAAGTTTTTT
GCCCCACTTACTCTTAGAAGACTACAGACAATGGTCTTTTCACAGAAGTTCACTTCTCTCGAACAATTTTTAACGGCCAT
TTTTGAAGAGAGAATCGGGTTTGTTCGAAGTAATAAAAATTTGATGCGAATCATTCTTCAAGAAGCTTTTGTCACTTTGG
AGGTTCGAAGTCTTTTAGAACGAGTCTTTAGACAAAGAGTGGTTCCTTTGGTTCAAGAACATCTTAAAAAATTTCAAGAT
GCAGGAATGATTTCTAAAGAAATTTCAATCAGTAGTGCATTTCGTTTGGTTGCGGTCAATCTTGCGGGATTTGTTTTACT
TACAGAAATTTTTTATCCACCTAAACCCGAAGACGGCTGGGATCAAGAAACAGAATTAAAAAGAACGATCGAGTTTATTG
CAAGAGGGCTGGCTCCTAAAATACAAGAAGTTCCGGCTCCCGTTTTAAAACCTAAGAAAAAACCAACCGTTCGTAAAACT
GCGACGAAGGTGAAAAAGAAAAAGAAGAGATCTTAA

Upstream 100 bases:

>100_bases
CTTTTTAGGATTCGTGACGGCTCACGTTGTCTAAAAATTTAAAAAATTTGAGTCTTGACAAATTTCCTTGTGCAAAATTA
TAAGTGAGTGATTACTCACC

Downstream 100 bases:

>100_bases
AATCGCAGTCGATTTTGATCGGGAGTTTTTATGAATGTTTTCATCGATAAAATAAAATATTGGTTTGCGGTCTATAGATC
TCTACGTCTTGTGTTTCGGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcription Regulator; AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDSPNQEMHESIELDSKWPEGQKKIFLAAIEIFAQKGFSAATTIEISKKAGVAEGLIFKHFKSKKELLLRLVSPILEKFF
APLTLRRLQTMVFSQKFTSLEQFLTAIFEERIGFVRSNKNLMRIILQEAFVTLEVRSLLERVFRQRVVPLVQEHLKKFQD
AGMISKEISISSAFRLVAVNLAGFVLLTEIFYPPKPEDGWDQETELKRTIEFIARGLAPKIQEVPAPVLKPKKKPTVRKT
ATKVKKKKKRS

Sequences:

>Translated_251_residues
MDSPNQEMHESIELDSKWPEGQKKIFLAAIEIFAQKGFSAATTIEISKKAGVAEGLIFKHFKSKKELLLRLVSPILEKFF
APLTLRRLQTMVFSQKFTSLEQFLTAIFEERIGFVRSNKNLMRIILQEAFVTLEVRSLLERVFRQRVVPLVQEHLKKFQD
AGMISKEISISSAFRLVAVNLAGFVLLTEIFYPPKPEDGWDQETELKRTIEFIARGLAPKIQEVPAPVLKPKKKPTVRKT
ATKVKKKKKRS
>Mature_251_residues
MDSPNQEMHESIELDSKWPEGQKKIFLAAIEIFAQKGFSAATTIEISKKAGVAEGLIFKHFKSKKELLLRLVSPILEKFF
APLTLRRLQTMVFSQKFTSLEQFLTAIFEERIGFVRSNKNLMRIILQEAFVTLEVRSLLERVFRQRVVPLVQEHLKKFQD
AGMISKEISISSAFRLVAVNLAGFVLLTEIFYPPKPEDGWDQETELKRTIEFIARGLAPKIQEVPAPVLKPKKKPTVRKT
ATKVKKKKKRS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28798; Mature: 28798

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA