| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
Click here to switch to the map view.
The map label for this gene is popC [H]
Identifier: 45658221
GI number: 45658221
Start: 2879082
End: 2879987
Strand: Reverse
Name: popC [H]
Synonym: LIC12375
Alternate gene names: 45658221
Gene position: 2879987-2879082 (Counterclockwise)
Preceding gene: 45658222
Following gene: 45658220
Centisome position: 67.33
GC content: 35.54
Gene sequence:
>906_bases GTGTGGATGTCTTCTTATGTTTCGGCATTCAGAACTTGGAACAAAAAGCGCGATCGCTTAAAGTATTGTAAAATTACTTC TTTCATTGAAAAAAATATTTCGCTGAAACAACGCGTATCCTTTTTTGTTCATTGCAATAAAATTTTGATTTGGAAAATCC GTCGCATGAACTTTTTTACAACACAGATTCGTTTTAAACGAATCGGAATGGTTCTTTTGATTTCTATCTTTTTTTTCTTC AACGAGGTAGAAGCACAAGAGCAACTTGTGGAAGTAAAAGCTTACACAAATTTAATAGAGGCTTTCCAAAATTCTTCGGA TGTTCGTATTCTGCATTTGAACGGTCAAGGATTTAAAAATCTTCCGAGACAAATCGGAAATCTACAAAATTTAACAGAGT TGAATTTAGGGAGCAATTCACTTACGACAGTTCCTAAAGAAATCGGTCGGCTACGCAACTTACAAAGTTTGTGGTTGTTT GGAAACTGGCTGGCAACCCTTCCTGAAGAAGTCGGGGAACTTCACAATTTAGAAGAGCTAAGTTTAAGCAGGAACCTTCT CATTACACTTCCAAAAGAAATCAGGCGGCTACAAAATTTACAAGTATTGAATCTATCTGACAATCGTCCCACTTTCACCG TTCTTCCAAAAGAAATCGGAGAACTACGGAATTTAAAAGAGTTGAATTTAGAGAACAATTCACTTACGACAATTCCTAAA GAAATCGGAAAACTACAAAATTTAAAATGGTTGCGTTTAGGGAGCAATTCACTTACGACGCTTCCAAAAGAAATCGGAGA ACTACGGAATTTAAAAGAGTTGGATTTGAGTTCGAATTCTCTTTCGGTCAAAGAGAAAAAGAGAATTCGAAAGTTACTTC CAAAATGTTCTATCATCTATTTTTGA
Upstream 100 bases:
>100_bases AGTTCATTGAACCTTAACCAATGCGAAAGCGATTCTATGTAGAGATCCAGAACACGATCCGTAGGAGAAGAGAGCCGTTT TACTAAGTTCTATAAAAATA
Downstream 100 bases:
>100_bases ATAACGACTTATTTATACGAACTTTCAAAAACATTTGGAAATTACGAATTCGCCCTCAAAGATGTTTACGTTAATGTAAT AAACGATGATCTTTGAATGT
Product: cytoplasmic membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MWMSSYVSAFRTWNKKRDRLKYCKITSFIEKNISLKQRVSFFVHCNKILIWKIRRMNFFTTQIRFKRIGMVLLISIFFFF NEVEAQEQLVEVKAYTNLIEAFQNSSDVRILHLNGQGFKNLPRQIGNLQNLTELNLGSNSLTTVPKEIGRLRNLQSLWLF GNWLATLPEEVGELHNLEELSLSRNLLITLPKEIRRLQNLQVLNLSDNRPTFTVLPKEIGELRNLKELNLENNSLTTIPK EIGKLQNLKWLRLGSNSLTTLPKEIGELRNLKELDLSSNSLSVKEKKRIRKLLPKCSIIYF
Sequences:
>Translated_301_residues MWMSSYVSAFRTWNKKRDRLKYCKITSFIEKNISLKQRVSFFVHCNKILIWKIRRMNFFTTQIRFKRIGMVLLISIFFFF NEVEAQEQLVEVKAYTNLIEAFQNSSDVRILHLNGQGFKNLPRQIGNLQNLTELNLGSNSLTTVPKEIGRLRNLQSLWLF GNWLATLPEEVGELHNLEELSLSRNLLITLPKEIRRLQNLQVLNLSDNRPTFTVLPKEIGELRNLKELNLENNSLTTIPK EIGKLQNLKWLRLGSNSLTTLPKEIGELRNLKELDLSSNSLSVKEKKRIRKLLPKCSIIYF >Mature_301_residues MWMSSYVSAFRTWNKKRDRLKYCKITSFIEKNISLKQRVSFFVHCNKILIWKIRRMNFFTTQIRFKRIGMVLLISIFFFF NEVEAQEQLVEVKAYTNLIEAFQNSSDVRILHLNGQGFKNLPRQIGNLQNLTELNLGSNSLTTVPKEIGRLRNLQSLWLF GNWLATLPEEVGELHNLEELSLSRNLLITLPKEIRRLQNLQVLNLSDNRPTFTVLPKEIGELRNLKELNLENNSLTTIPK EIGKLQNLKWLRLGSNSLTTLPKEIGELRNLKELDLSSNSLSVKEKKRIRKLLPKCSIIYF
Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 22 LRR (leucine-rich) repeats [H]
Homologues:
Organism=Homo sapiens, GI95113664, Length=186, Percent_Identity=41.9354838709677, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI238908508, Length=196, Percent_Identity=38.7755102040816, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI110825984, Length=198, Percent_Identity=37.8787878787879, Blast_Score=109, Evalue=4e-24, Organism=Homo sapiens, GI61742784, Length=162, Percent_Identity=40.7407407407407, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI45827729, Length=207, Percent_Identity=34.2995169082126, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI45827731, Length=207, Percent_Identity=34.2995169082126, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI197333706, Length=178, Percent_Identity=35.9550561797753, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI34222199, Length=178, Percent_Identity=35.9550561797753, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI154091020, Length=186, Percent_Identity=34.9462365591398, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI6912638, Length=156, Percent_Identity=41.6666666666667, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI187829877, Length=163, Percent_Identity=38.6503067484663, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI62241040, Length=163, Percent_Identity=38.6503067484663, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI187829871, Length=163, Percent_Identity=38.6503067484663, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI61742786, Length=165, Percent_Identity=40, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI55770895, Length=187, Percent_Identity=35.2941176470588, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI21361633, Length=183, Percent_Identity=37.7049180327869, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI8923909, Length=187, Percent_Identity=35.2941176470588, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI41281398, Length=157, Percent_Identity=41.4012738853503, Blast_Score=99, Evalue=6e-21, Organism=Homo sapiens, GI197333692, Length=177, Percent_Identity=37.8531073446328, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI21245134, Length=177, Percent_Identity=37.8531073446328, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI16904383, Length=197, Percent_Identity=34.010152284264, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI122937315, Length=190, Percent_Identity=35.7894736842105, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40217803, Length=180, Percent_Identity=35.5555555555556, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI14249428, Length=189, Percent_Identity=35.978835978836, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI21389431, Length=206, Percent_Identity=34.9514563106796, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI34577083, Length=140, Percent_Identity=41.4285714285714, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI190014581, Length=188, Percent_Identity=31.3829787234043, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI33859670, Length=201, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI256017174, Length=201, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI256017180, Length=201, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI30181233, Length=185, Percent_Identity=35.1351351351351, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI63003903, Length=173, Percent_Identity=34.1040462427746, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI19923729, Length=189, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI167466264, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI194394161, Length=164, Percent_Identity=37.8048780487805, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4503743, Length=160, Percent_Identity=36.875, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI193788651, Length=210, Percent_Identity=30.952380952381, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI153792305, Length=183, Percent_Identity=34.9726775956284, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33285015, Length=176, Percent_Identity=34.0909090909091, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI299758423, Length=133, Percent_Identity=33.8345864661654, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI53729363, Length=133, Percent_Identity=33.8345864661654, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI53729359, Length=133, Percent_Identity=33.8345864661654, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI53729361, Length=133, Percent_Identity=33.8345864661654, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI157743290, Length=174, Percent_Identity=30.4597701149425, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI291219891, Length=184, Percent_Identity=27.7173913043478, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157694513, Length=190, Percent_Identity=35.2631578947368, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI256217721, Length=191, Percent_Identity=36.6492146596859, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI288541297, Length=188, Percent_Identity=36.7021276595745, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI288541295, Length=188, Percent_Identity=36.7021276595745, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI4504379, Length=185, Percent_Identity=34.0540540540541, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI24308207, Length=161, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71991525, Length=211, Percent_Identity=36.9668246445498, Blast_Score=114, Evalue=8e-26, Organism=Caenorhabditis elegans, GI71991531, Length=211, Percent_Identity=36.9668246445498, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71981160, Length=191, Percent_Identity=36.6492146596859, Blast_Score=101, Evalue=6e-22, Organism=Caenorhabditis elegans, GI71981152, Length=192, Percent_Identity=36.4583333333333, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI25143890, Length=172, Percent_Identity=36.6279069767442, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71993778, Length=175, Percent_Identity=37.7142857142857, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI71993783, Length=175, Percent_Identity=37.7142857142857, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71998904, Length=186, Percent_Identity=34.9462365591398, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17537883, Length=186, Percent_Identity=34.9462365591398, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71998900, Length=186, Percent_Identity=34.9462365591398, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17552452, Length=153, Percent_Identity=35.9477124183007, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17510303, Length=196, Percent_Identity=31.6326530612245, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71985928, Length=177, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17550406, Length=200, Percent_Identity=26.5, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322455, Length=130, Percent_Identity=35.3846153846154, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324929, Length=130, Percent_Identity=33.0769230769231, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI62472958, Length=179, Percent_Identity=37.4301675977654, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI116007092, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24650330, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24650334, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24650332, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI281362657, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI281362653, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI281362655, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI281362651, Length=179, Percent_Identity=37.4301675977654, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI19922294, Length=173, Percent_Identity=41.0404624277457, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI24650336, Length=179, Percent_Identity=37.4301675977654, Blast_Score=104, Evalue=9e-23, Organism=Drosophila melanogaster, GI221379725, Length=164, Percent_Identity=40.2439024390244, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI221379722, Length=164, Percent_Identity=40.2439024390244, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24641036, Length=222, Percent_Identity=31.5315315315315, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI17933612, Length=160, Percent_Identity=38.125, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI45550188, Length=166, Percent_Identity=37.9518072289157, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI161078260, Length=206, Percent_Identity=31.5533980582524, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161078262, Length=206, Percent_Identity=31.5533980582524, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584804, Length=176, Percent_Identity=36.9318181818182, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI161078264, Length=206, Percent_Identity=31.5533980582524, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI21358045, Length=206, Percent_Identity=31.5533980582524, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI45551891, Length=206, Percent_Identity=31.5533980582524, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI18858105, Length=173, Percent_Identity=32.3699421965318, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI19922706, Length=187, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584802, Length=174, Percent_Identity=36.7816091954023, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI19922622, Length=166, Percent_Identity=34.9397590361446, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24762640, Length=162, Percent_Identity=34.5679012345679, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24762638, Length=162, Percent_Identity=34.5679012345679, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001611 [H]
Pfam domain/function: PF00560 LRR_1 [H]
EC number: NA
Molecular weight: Translated: 35233; Mature: 35233
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWMSSYVSAFRTWNKKRDRLKYCKITSFIEKNISLKQRVSFFVHCNKILIWKIRRMNFFT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEEEEEHHHHHHH TQIRFKRIGMVLLISIFFFFNEVEAQEQLVEVKAYTNLIEAFQNSSDVRILHLNGQGFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH LPRQIGNLQNLTELNLGSNSLTTVPKEIGRLRNLQSLWLFGNWLATLPEEVGELHNLEEL HHHHHCCHHCCHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHH SLSRNLLITLPKEIRRLQNLQVLNLSDNRPTFTVLPKEIGELRNLKELNLENNSLTTIPK HHCCCEEEECCHHHHHHCCCEEEEECCCCCEEEECHHHHHHHHCHHHCCCCCCCCCHHHH EIGKLQNLKWLRLGSNSLTTLPKEIGELRNLKELDLSSNSLSVKEKKRIRKLLPKCSIIY HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEC F C >Mature Secondary Structure MWMSSYVSAFRTWNKKRDRLKYCKITSFIEKNISLKQRVSFFVHCNKILIWKIRRMNFFT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCEEEEEEEHHHHHHH TQIRFKRIGMVLLISIFFFFNEVEAQEQLVEVKAYTNLIEAFQNSSDVRILHLNGQGFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH LPRQIGNLQNLTELNLGSNSLTTVPKEIGRLRNLQSLWLFGNWLATLPEEVGELHNLEEL HHHHHCCHHCCHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHH SLSRNLLITLPKEIRRLQNLQVLNLSDNRPTFTVLPKEIGELRNLKELNLENNSLTTIPK HHCCCEEEECCHHHHHHCCCEEEEECCCCCEEEECHHHHHHHHCHHHCCCCCCCCCHHHH EIGKLQNLKWLRLGSNSLTTLPKEIGELRNLKELDLSSNSLSVKEKKRIRKLLPKCSIIY HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCCEEC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10792715; 11823852 [H]