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The map label for this gene is ctpA [H]

Identifier: 45658151

GI number: 45658151

Start: 2777867

End: 2779255

Strand: Reverse

Name: ctpA [H]

Synonym: LIC12303

Alternate gene names: 45658151

Gene position: 2779255-2777867 (Counterclockwise)

Preceding gene: 45658152

Following gene: 45658150

Centisome position: 64.98

GC content: 38.59

Gene sequence:

>1389_bases
ATGAAAAATAAAGAAAGAATGATCTGGATTGGAATTGTTTCCTTTCTCAGCTTTGCACTGATTTTTCCGATAGAAACCGT
AAAAGGGATTTCTAAAACCGGGGAATCTTATCTACAAATTTTCCACGAAGTATTATCTACTATTCATTCCGACTATGTGG
AATCCGTAGACGAGGAAAAACTCTATCAAGGAGCCATTCGAGGACTTATTTCTTCTTTGGGAGATCCACATTCTCGTTTT
ATGGATAAGGATGATTTTTCTCAGCTCCAAGAGGAAACCAGGGGTAGTTTTGGCGGATTGGGAATGGAGGTTTCTTTTGC
GGATGGTGCGATTGTAGTCATTTCTCCCATTGAAGACACACCCGCAATGAAGGCTGGGATTTTACCTCAGGATAGAATCA
TAGAAATCGACGGGAAAAACACACATGATCTTTCTCTTTCCGATTCTATCAAACTGATGCGTGGTAAGGTAGGAACCTCC
GTTTCTATCAAATTGGAAAGAAAGAATCAAAAGGAACCTATGGTTCTCACCTTAGTCAGAGAGATGATCAAAATTCGTTA
TGTAAGATCTTCTTTTTTGGAAAAAGAAAAATTAGGTTATATCAAACTCAATCAGTTTATGGGAAAGGAAAATACTCTTT
CCGAATTTAAAAAGGAGTTAAATTCCCTCAAAGAAAAGGGGGCCGAAGGGTTGATCTTAGATTTGAGAATGAACCCGGGC
GGACTTTTAGATCTTGCGATAGCACTTTCTGATTTATTCTTAAAACCGGACTTAGACATTGTGTCCGTAAGAGGAAGAGG
GGGGGAACTCGTTCGGGTTTTCCGTTCTACTGCAGCAAATGATAAGTTCATCAATTTACCGTTAGTTGTACTGATCAACG
AAGGATCTGCCAGCGCTTCCGAAATTTTTGCAGGAGCGATGCAGGATCATGGAAGAGGAAAAATTTTAGGAACGGTTTCT
TTTGGAAAAGGTTCGGTTCAAAATATCTATTCACTGTCGCATAACACTGGTATTGCGCTGACGATACAAAAGTATTATAC
TCCGAGTGGAAAATCGATTCACGGAAAAGGAATTCAACCGGATGTAATTGTAAAGCCGATTGAACCTACTGAAGACGATC
GTTTTTATATCCGTAAGATGGCCGAAAAGAAAATGCTTGAGACATTCCTCTTAAAAAATCCAAATTATTCGGAAGCGAAT
TTTGTCCTTTTGGAGAAATATCTTTCTGAAAAAGGAATCAAACTTTCTGCGGATGTAGCCAGATTTTTATATAAAAGTAA
AACTCGTCAAGAAGGGCAAAATTCGATTTTGGATTTGGAGCTGGATCCACAACTTCGTAAGGCGATTGAAATTCTAAGTC
CTAACAAAGACGGAGAAAAAAAATCTTAA

Upstream 100 bases:

>100_bases
TTTTTAGAAGCTTGTTCTGCGTATCGATTGGATCCAGATAGTGTACTAAAAAGTCTGAAACAAAAAAATCCCGCCCTACA
CGAGGCGTTGATCAAAGAAT

Downstream 100 bases:

>100_bases
ACCCATGATCGGAATGGGAATCGAAACCAGTTGTGATGAAACATCGATTGGGATCGTGCGCGATGGTAAGGACTTACTTA
GCCTTAAAATTTTCAGTCAG

Product: carboxy-terminal processing protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKNKERMIWIGIVSFLSFALIFPIETVKGISKTGESYLQIFHEVLSTIHSDYVESVDEEKLYQGAIRGLISSLGDPHSRF
MDKDDFSQLQEETRGSFGGLGMEVSFADGAIVVISPIEDTPAMKAGILPQDRIIEIDGKNTHDLSLSDSIKLMRGKVGTS
VSIKLERKNQKEPMVLTLVREMIKIRYVRSSFLEKEKLGYIKLNQFMGKENTLSEFKKELNSLKEKGAEGLILDLRMNPG
GLLDLAIALSDLFLKPDLDIVSVRGRGGELVRVFRSTAANDKFINLPLVVLINEGSASASEIFAGAMQDHGRGKILGTVS
FGKGSVQNIYSLSHNTGIALTIQKYYTPSGKSIHGKGIQPDVIVKPIEPTEDDRFYIRKMAEKKMLETFLLKNPNYSEAN
FVLLEKYLSEKGIKLSADVARFLYKSKTRQEGQNSILDLELDPQLRKAIEILSPNKDGEKKS

Sequences:

>Translated_462_residues
MKNKERMIWIGIVSFLSFALIFPIETVKGISKTGESYLQIFHEVLSTIHSDYVESVDEEKLYQGAIRGLISSLGDPHSRF
MDKDDFSQLQEETRGSFGGLGMEVSFADGAIVVISPIEDTPAMKAGILPQDRIIEIDGKNTHDLSLSDSIKLMRGKVGTS
VSIKLERKNQKEPMVLTLVREMIKIRYVRSSFLEKEKLGYIKLNQFMGKENTLSEFKKELNSLKEKGAEGLILDLRMNPG
GLLDLAIALSDLFLKPDLDIVSVRGRGGELVRVFRSTAANDKFINLPLVVLINEGSASASEIFAGAMQDHGRGKILGTVS
FGKGSVQNIYSLSHNTGIALTIQKYYTPSGKSIHGKGIQPDVIVKPIEPTEDDRFYIRKMAEKKMLETFLLKNPNYSEAN
FVLLEKYLSEKGIKLSADVARFLYKSKTRQEGQNSILDLELDPQLRKAIEILSPNKDGEKKS
>Mature_462_residues
MKNKERMIWIGIVSFLSFALIFPIETVKGISKTGESYLQIFHEVLSTIHSDYVESVDEEKLYQGAIRGLISSLGDPHSRF
MDKDDFSQLQEETRGSFGGLGMEVSFADGAIVVISPIEDTPAMKAGILPQDRIIEIDGKNTHDLSLSDSIKLMRGKVGTS
VSIKLERKNQKEPMVLTLVREMIKIRYVRSSFLEKEKLGYIKLNQFMGKENTLSEFKKELNSLKEKGAEGLILDLRMNPG
GLLDLAIALSDLFLKPDLDIVSVRGRGGELVRVFRSTAANDKFINLPLVVLINEGSASASEIFAGAMQDHGRGKILGTVS
FGKGSVQNIYSLSHNTGIALTIQKYYTPSGKSIHGKGIQPDVIVKPIEPTEDDRFYIRKMAEKKMLETFLLKNPNYSEAN
FVLLEKYLSEKGIKLSADVARFLYKSKTRQEGQNSILDLELDPQLRKAIEILSPNKDGEKKS

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=315, Percent_Identity=33.6507936507937, Blast_Score=131, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 51530; Mature: 51530

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKERMIWIGIVSFLSFALIFPIETVKGISKTGESYLQIFHEVLSTIHSDYVESVDEEK
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LYQGAIRGLISSLGDPHSRFMDKDDFSQLQEETRGSFGGLGMEVSFADGAIVVISPIEDT
HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCC
PAMKAGILPQDRIIEIDGKNTHDLSLSDSIKLMRGKVGTSVSIKLERKNQKEPMVLTLVR
CCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHH
EMIKIRYVRSSFLEKEKLGYIKLNQFMGKENTLSEFKKELNSLKEKGAEGLILDLRMNPG
HHHHHHHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
GLLDLAIALSDLFLKPDLDIVSVRGRGGELVRVFRSTAANDKFINLPLVVLINEGSASAS
CHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECEEEEEECCCCCCHH
EIFAGAMQDHGRGKILGTVSFGKGSVQNIYSLSHNTGIALTIQKYYTPSGKSIHGKGIQP
HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCCC
DVIVKPIEPTEDDRFYIRKMAEKKMLETFLLKNPNYSEANFVLLEKYLSEKGIKLSADVA
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEHHHHH
RFLYKSKTRQEGQNSILDLELDPQLRKAIEILSPNKDGEKKS
HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKNKERMIWIGIVSFLSFALIFPIETVKGISKTGESYLQIFHEVLSTIHSDYVESVDEEK
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LYQGAIRGLISSLGDPHSRFMDKDDFSQLQEETRGSFGGLGMEVSFADGAIVVISPIEDT
HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCC
PAMKAGILPQDRIIEIDGKNTHDLSLSDSIKLMRGKVGTSVSIKLERKNQKEPMVLTLVR
CCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHH
EMIKIRYVRSSFLEKEKLGYIKLNQFMGKENTLSEFKKELNSLKEKGAEGLILDLRMNPG
HHHHHHHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
GLLDLAIALSDLFLKPDLDIVSVRGRGGELVRVFRSTAANDKFINLPLVVLINEGSASAS
CHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECEEEEEECCCCCCHH
EIFAGAMQDHGRGKILGTVSFGKGSVQNIYSLSHNTGIALTIQKYYTPSGKSIHGKGIQP
HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEECCCCCEECCCCCCC
DVIVKPIEPTEDDRFYIRKMAEKKMLETFLLKNPNYSEANFVLLEKYLSEKGIKLSADVA
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEHHHHH
RFLYKSKTRQEGQNSILDLELDPQLRKAIEILSPNKDGEKKS
HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]