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The map label for this gene is yggS [C]

Identifier: 45658124

GI number: 45658124

Start: 2748520

End: 2749188

Strand: Reverse

Name: yggS [C]

Synonym: LIC12276

Alternate gene names: 45658124

Gene position: 2749188-2748520 (Counterclockwise)

Preceding gene: 45658125

Following gene: 45658123

Centisome position: 64.28

GC content: 35.58

Gene sequence:

>669_bases
ATGGGGGTTTTAGAGAGTTATCAAAAAATTTACGAGGAACTTCAGCAACTTAGGTCGGAAAATCCTCCTACACTCATCGC
CGTTTCTAAGTTTCAACCGATCGAAAAAATCAAAGAAGCGATTGGATGTGGTGTTGTCCATTTCGGTGAAAATAGAATTC
AAGAAGGAATCGAAAAGTTTTCACAGTGGTTAAAAGATAAAAATACATCTCTGGTTTTACATCATATCGGACCAGTTCAA
AGTGGAACTTTGCGAAAGTTATTTTTAGGATATTCATACGCTCATGGAGTGGGGAGTGTTGGAATCGTAAACGAACTTTT
AACTAGAGCGCTAAGGGAAGAAAAAAAAATTTTATACTTTCTACAAGCAAATTTAACCGGAGAAAATACAAAACACGGTT
TTGAAAGAAAAGAACTGATCGAAATTTTAAAACAAAAAGAAAAATTGTCTAATACTTACTGCAAGTTAGAAGGACTCATG
GTAATGGGGCCTTCGGACGGAGATCTTACTAAAACCAGAGAAGTTTTTCGAGAACTTTCTAAATTCAAAAAAGATTATAT
ACCGGAAGCGAAACTTTCTATGGGAATGTCTGGAGATTATAAAATCGCGATCGAAGAGGGAAGTGATTTTGTTAGGATTG
GAAGTGCGATTTTTGGAGAAAGAAATTGA

Upstream 100 bases:

>100_bases
AAGAAAAAACATAAAACTCATAAAGTAGATCGAAAAAGTTTAGAAAAAAGGGTTCAAAAGTTAGAAAGAGAAATGGAGAG
GCTAAAAACAAAAGAGTAAT

Downstream 100 bases:

>100_bases
TATGAAATATACGATAGGAATTGCGGGTTGTGGAAATATGGGAGGAGCAATTTATTTCTCTCTTAAAGAACGTTATCCGA
CACAAGTATTGGGATATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MGVLESYQKIYEELQQLRSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKFSQWLKDKNTSLVLHHIGPVQ
SGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYFLQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLM
VMGPSDGDLTKTREVFRELSKFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN

Sequences:

>Translated_222_residues
MGVLESYQKIYEELQQLRSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKFSQWLKDKNTSLVLHHIGPVQ
SGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYFLQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLM
VMGPSDGDLTKTREVFRELSKFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
>Mature_221_residues
GVLESYQKIYEELQQLRSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKFSQWLKDKNTSLVLHHIGPVQS
GTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYFLQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLMV
MGPSDGDLTKTREVFRELSKFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=247, Percent_Identity=34.412955465587, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI1789321, Length=209, Percent_Identity=34.9282296650718, Blast_Score=114, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17533025, Length=220, Percent_Identity=30.4545454545455, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319435, Length=210, Percent_Identity=32.3809523809524, Blast_Score=75, Evalue=8e-15,
Organism=Drosophila melanogaster, GI45550861, Length=227, Percent_Identity=33.0396475770925, Blast_Score=81, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25161; Mature: 25030

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVLESYQKIYEELQQLRSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKF
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEECCHHHHHHHHHHH
SQWLKDKNTSLVLHHIGPVQSGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYF
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEE
LQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLMVMGPSDGDLTKTREVFRELS
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCHHHHHHHHHHHH
KFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
HHHHHCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GVLESYQKIYEELQQLRSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKF
CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEECCHHHHHHHHHHH
SQWLKDKNTSLVLHHIGPVQSGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYF
HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEE
LQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLMVMGPSDGDLTKTREVFRELS
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCHHHHHHHHHHHH
KFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN
HHHHHCCCCHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]