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The map label for this gene is capD [H]

Identifier: 45657989

GI number: 45657989

Start: 2587626

End: 2588660

Strand: Reverse

Name: capD [H]

Synonym: LIC12141

Alternate gene names: 45657989

Gene position: 2588660-2587626 (Counterclockwise)

Preceding gene: 45657990

Following gene: 45657988

Centisome position: 60.52

GC content: 33.82

Gene sequence:

>1035_bases
ATGTTTAAGAACAAATCTCTTTTAATAACTGGCGGAACAGGCTCTTTTGGAAAAGCAGTCTTAGATCGATTTTTAAATAG
TGATATTAGAGAAATTAGAATTTTTAGTAGAGACGAAAAGAAACAAGATGATTTAAGAAAGAAACACAATAATTCTAAAC
TGAAATTTTTTGTGGGAGATGTTAGGGATTTAGATTCAGTTCGAAATGCTTTTCGAGGAGTTGAGTATGTATTTCATGCT
GCCGCTCTTAAGCAAGTTCCATCTTGTGAATTTTTTCCTTTAGAAGCGGTTAAAACAAATGTATTAGGAACTGAAAATGT
AATTGAAGCGGCTATTCAATGTAACGTCAAAAAAGTAGTTTGTTTGAGCACAGACAAAGCGGTTTATCCTATTAATGCAA
TGGGTATATCAAAAGCTATGATGGAAAAAGTTATGGTAGCTAAGTCTAGAAGTATCGAAAAATCAGATATGATGGTTTGT
GGAACTCGTTACGGGAATGTGATGGCTTCTAGGGGTTCTGTAATTCCTCTTTTTATAGAACAAGTTAAAAGTGGGAAACC
GATTACGATAACCGATCCGAATATGACTCGGTTTATGATGTCTTTAGAAGATGCGGTAGAACTTGTATTGTTTGCGTTCC
AAAATGGAAATAATGGTGACATTTTTGTACAAAAAGCTTCAGCGGCAACGATTGAAGTTTTGTCGAAAGCTTTATTAGAA
TTATTAGATAAGTCCCATCACCCTGTTGAGATTATAGGCACTCGTCATGGTGAAAAGCTCTATGAGACTCTTCTGAGTCG
TGAAGAAATGGCCAACGCTGAGGATTTGAAAGATTACTATAGAGTTCCACCCGATCTAAGAGATTTAAATTATGAGAAGT
TTATTGATCAAGGAGAAAAAAAGATTTCTACATTAGAAGATTATAATTCTCACAATACCAAAAGATTAAATTTAAAAGAA
ATGAAGGAGATGTTGTTAAAGCTACAATTTATTAGGAATGTGATCGAAGGAAAACCAGCAGAAATAATTGATTAG

Upstream 100 bases:

>100_bases
TAGTAGAGAAATGGGTTTTATTCTTAAATCTTGGGATAGGTTGATGGTTGATTCAAGAAATAAAAAATTACAGAGATAAA
AGATCGCGGAGTTGTATTGA

Downstream 100 bases:

>100_bases
ATTATCATGAATATTTTAGTAACGGGTGCAAATGGTTTTATTGGAAAAAATCTAACTTTTCAACTAAAAGAGAGAAAAGA
ATTTAAAATATTTTTTTATA

Product: UDP-glucose 4-epimerase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MFKNKSLLITGGTGSFGKAVLDRFLNSDIREIRIFSRDEKKQDDLRKKHNNSKLKFFVGDVRDLDSVRNAFRGVEYVFHA
AALKQVPSCEFFPLEAVKTNVLGTENVIEAAIQCNVKKVVCLSTDKAVYPINAMGISKAMMEKVMVAKSRSIEKSDMMVC
GTRYGNVMASRGSVIPLFIEQVKSGKPITITDPNMTRFMMSLEDAVELVLFAFQNGNNGDIFVQKASAATIEVLSKALLE
LLDKSHHPVEIIGTRHGEKLYETLLSREEMANAEDLKDYYRVPPDLRDLNYEKFIDQGEKKISTLEDYNSHNTKRLNLKE
MKEMLLKLQFIRNVIEGKPAEIID

Sequences:

>Translated_344_residues
MFKNKSLLITGGTGSFGKAVLDRFLNSDIREIRIFSRDEKKQDDLRKKHNNSKLKFFVGDVRDLDSVRNAFRGVEYVFHA
AALKQVPSCEFFPLEAVKTNVLGTENVIEAAIQCNVKKVVCLSTDKAVYPINAMGISKAMMEKVMVAKSRSIEKSDMMVC
GTRYGNVMASRGSVIPLFIEQVKSGKPITITDPNMTRFMMSLEDAVELVLFAFQNGNNGDIFVQKASAATIEVLSKALLE
LLDKSHHPVEIIGTRHGEKLYETLLSREEMANAEDLKDYYRVPPDLRDLNYEKFIDQGEKKISTLEDYNSHNTKRLNLKE
MKEMLLKLQFIRNVIEGKPAEIID
>Mature_344_residues
MFKNKSLLITGGTGSFGKAVLDRFLNSDIREIRIFSRDEKKQDDLRKKHNNSKLKFFVGDVRDLDSVRNAFRGVEYVFHA
AALKQVPSCEFFPLEAVKTNVLGTENVIEAAIQCNVKKVVCLSTDKAVYPINAMGISKAMMEKVMVAKSRSIEKSDMMVC
GTRYGNVMASRGSVIPLFIEQVKSGKPITITDPNMTRFMMSLEDAVELVLFAFQNGNNGDIFVQKASAATIEVLSKALLE
LLDKSHHPVEIIGTRHGEKLYETLLSREEMANAEDLKDYYRVPPDLRDLNYEKFIDQGEKKISTLEDYNSHNTKRLNLKE
MKEMLLKLQFIRNVIEGKPAEIID

Specific function: Epimerizes UDP-galactose to UDP-glucose [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869
- InterPro:   IPR013692 [H]

Pfam domain/function: PF08485 Polysacc_syn_2C; PF02719 Polysacc_synt_2 [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 38943; Mature: 38943

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNKSLLITGGTGSFGKAVLDRFLNSDIREIRIFSRDEKKQDDLRKKHNNSKLKFFVGD
CCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECC
VRDLDSVRNAFRGVEYVFHAAALKQVPSCEFFPLEAVKTNVLGTENVIEAAIQCNVKKVV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCEEEE
CLSTDKAVYPINAMGISKAMMEKVMVAKSRSIEKSDMMVCGTRYGNVMASRGSVIPLFIE
EEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCHHHHHH
QVKSGKPITITDPNMTRFMMSLEDAVELVLFAFQNGNNGDIFVQKASAATIEVLSKALLE
HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHH
LLDKSHHPVEIIGTRHGEKLYETLLSREEMANAEDLKDYYRVPPDLRDLNYEKFIDQGEK
HHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCHHHHHHHHHH
KISTLEDYNSHNTKRLNLKEMKEMLLKLQFIRNVIEGKPAEIID
HHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFKNKSLLITGGTGSFGKAVLDRFLNSDIREIRIFSRDEKKQDDLRKKHNNSKLKFFVGD
CCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECC
VRDLDSVRNAFRGVEYVFHAAALKQVPSCEFFPLEAVKTNVLGTENVIEAAIQCNVKKVV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCEEEE
CLSTDKAVYPINAMGISKAMMEKVMVAKSRSIEKSDMMVCGTRYGNVMASRGSVIPLFIE
EEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCHHHHHH
QVKSGKPITITDPNMTRFMMSLEDAVELVLFAFQNGNNGDIFVQKASAATIEVLSKALLE
HHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHH
LLDKSHHPVEIIGTRHGEKLYETLLSREEMANAEDLKDYYRVPPDLRDLNYEKFIDQGEK
HHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCHHHHHHHHHH
KISTLEDYNSHNTKRLNLKEMKEMLLKLQFIRNVIEGKPAEIID
HHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA