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The map label for this gene is recO

Identifier: 45657952

GI number: 45657952

Start: 2544910

End: 2545692

Strand: Reverse

Name: recO

Synonym: LIC12104

Alternate gene names: 45657952

Gene position: 2545692-2544910 (Counterclockwise)

Preceding gene: 45657953

Following gene: 45657951

Centisome position: 59.52

GC content: 37.55

Gene sequence:

>783_bases
ATGTCTGGAAATTCTCCAGGGGCTCTGAAAAAAATCCGAGGAATTGTATTAGAATCTAAAACGATTCAGGAAGGAGACGC
GCTCATTCGTTTGCTTCCTGAAGCTGGTTCTGTGGAAAATTTTCGCATTCGTGGAATTCGGAAAAGTAAAACTAGACCAA
TCGCTTCTGTAGAGCCAGGTTCGCTTTCGGATGTGGATTATTATCATTCCAAAAATAAAGAGACGCATAACGTAAAAGAG
ATTTCTCTAATCAATCGATTTGACCGCGCTAAGTCTGGTTATTTAGGAACTGTACTCGTATCTTATCTCGTGGAACTTGC
ATCTTCATTTACGCCAGATGGAGCTGAACATCCAGGAGAGTTTCGTTTATTGTTTGGGGCTTTGGAAGAATTAGAAGAAA
ATGGTATTTCTATTTTAATTTTACCTTTTTTTAAATTACGTCTTCTTGTATCTGGAGGATTTCTTTCTAAGGAACTGATA
TGTCATTCTTGCGGGGCTGAGTTGAAAGAGATGACATTCGTTACATTACAAACTACTCCGCTGGAATTGATCTGTGGAAA
TTGTCTTTACGGAGACAGAAATGATTTAGGTTGTGTGCAATGGATTCAAACGTTTTTGATGCTTAGGTTTCGAGACTTAA
AAGAAAGAGAAATATCCGTTGAAAACATTCTGGACTTAGACAGAATTTGTAATCAAATGCTCGAACCAATTTTAAGAAAG
AAATTAAAATCTGCGCCGACCTTATACGAAGCGCTTGGAGAAAATCTTGGAAAGTTTTCTTAA

Upstream 100 bases:

>100_bases
AGTTTTATCGATTATTGGTTCACGGATTTTTACATCTCTTAGGTTATGATCACGAACGGGGAGATAAAGAGGAACACATT
ATGAAATTGAAGGAAGACGA

Downstream 100 bases:

>100_bases
GACGATGCTTTTTATCTTTTATTTCTGCGTGCTTTTGTTCTTTACGATACTGGATATTCGTTGGGATCAAAAAGTTCCAG
TTCAAATTTCGGTTGTAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSGNSPGALKKIRGIVLESKTIQEGDALIRLLPEAGSVENFRIRGIRKSKTRPIASVEPGSLSDVDYYHSKNKETHNVKE
ISLINRFDRAKSGYLGTVLVSYLVELASSFTPDGAEHPGEFRLLFGALEELEENGISILILPFFKLRLLVSGGFLSKELI
CHSCGAELKEMTFVTLQTTPLELICGNCLYGDRNDLGCVQWIQTFLMLRFRDLKEREISVENILDLDRICNQMLEPILRK
KLKSAPTLYEALGENLGKFS

Sequences:

>Translated_260_residues
MSGNSPGALKKIRGIVLESKTIQEGDALIRLLPEAGSVENFRIRGIRKSKTRPIASVEPGSLSDVDYYHSKNKETHNVKE
ISLINRFDRAKSGYLGTVLVSYLVELASSFTPDGAEHPGEFRLLFGALEELEENGISILILPFFKLRLLVSGGFLSKELI
CHSCGAELKEMTFVTLQTTPLELICGNCLYGDRNDLGCVQWIQTFLMLRFRDLKEREISVENILDLDRICNQMLEPILRK
KLKSAPTLYEALGENLGKFS
>Mature_259_residues
SGNSPGALKKIRGIVLESKTIQEGDALIRLLPEAGSVENFRIRGIRKSKTRPIASVEPGSLSDVDYYHSKNKETHNVKEI
SLINRFDRAKSGYLGTVLVSYLVELASSFTPDGAEHPGEFRLLFGALEELEENGISILILPFFKLRLLVSGGFLSKELIC
HSCGAELKEMTFVTLQTTPLELICGNCLYGDRNDLGCVQWIQTFLMLRFRDLKEREISVENILDLDRICNQMLEPILRKK
LKSAPTLYEALGENLGKFS

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29110; Mature: 28979

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNSPGALKKIRGIVLESKTIQEGDALIRLLPEAGSVENFRIRGIRKSKTRPIASVEPG
CCCCCCHHHHHHHHHHHCCCHHHHCCHHHEECCCCCCCCCEEEECCCCCCCCCCCCCCCC
SLSDVDYYHSKNKETHNVKEISLINRFDRAKSGYLGTVLVSYLVELASSFTPDGAEHPGE
CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
FRLLFGALEELEENGISILILPFFKLRLLVSGGFLSKELICHSCGAELKEMTFVTLQTTP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHEEEEEEECCC
LELICGNCLYGDRNDLGCVQWIQTFLMLRFRDLKEREISVENILDLDRICNQMLEPILRK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KLKSAPTLYEALGENLGKFS
HHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGNSPGALKKIRGIVLESKTIQEGDALIRLLPEAGSVENFRIRGIRKSKTRPIASVEPG
CCCCCHHHHHHHHHHHCCCHHHHCCHHHEECCCCCCCCCEEEECCCCCCCCCCCCCCCC
SLSDVDYYHSKNKETHNVKEISLINRFDRAKSGYLGTVLVSYLVELASSFTPDGAEHPGE
CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
FRLLFGALEELEENGISILILPFFKLRLLVSGGFLSKELICHSCGAELKEMTFVTLQTTP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHEEEEEEECCC
LELICGNCLYGDRNDLGCVQWIQTFLMLRFRDLKEREISVENILDLDRICNQMLEPILRK
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KLKSAPTLYEALGENLGKFS
HHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA