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The map label for this gene is ybeY [C]

Identifier: 45657953

GI number: 45657953

Start: 2545665

End: 2546090

Strand: Reverse

Name: ybeY [C]

Synonym: LIC12105

Alternate gene names: 45657953

Gene position: 2546090-2545665 (Counterclockwise)

Preceding gene: 45657954

Following gene: 45657952

Centisome position: 59.53

GC content: 35.92

Gene sequence:

>426_bases
ATGAATTGTAAGATTCTTTTTCGTAAAGAATTGAATGATTCTGAGTGTGAACTGAGTCTTTTGCTTGTTGGAGATTCGGA
TATGAAGGAAATCAATCGTCTACGTCGTGGAAAAGATAAAACCACGGACGTACTTTCTTTTCCTTTGGAGTTTGATTTTT
CTCCCTTACAAAAGATACTTCCAAAAAATACTAGTTCTGATCAGAAAATGTTTCCACCAGTTGCGTTAGGCGAAATTGTA
ATTTCAATAGATACACTTCAAAAACAAGCAAAAGAAATTGGTCATTCCGAAAAAGACGAGTTTTATCGATTATTGGTTCA
CGGATTTTTACATCTCTTAGGTTATGATCACGAACGGGGAGATAAAGAGGAACACATTATGAAATTGAAGGAAGACGAAT
GTCTGGAAATTCTCCAGGGGCTCTGA

Upstream 100 bases:

>100_bases
AGATTAAAAACATTTCGGGGAAAACAAACTGATTTCTGATTTAGTTTCTATCTCCAATGACTATGGGGAAATTTTTTGGT
GGAATGAATCAGAAGTACTT

Downstream 100 bases:

>100_bases
AAAAAATCCGAGGAATTGTATTAGAATCTAAAACGATTCAGGAAGGAGACGCGCTCATTCGTTTGCTTCCTGAAGCTGGT
TCTGTGGAAAATTTTCGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNCKILFRKELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQKMFPPVALGEIV
ISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMKLKEDECLEILQGL

Sequences:

>Translated_141_residues
MNCKILFRKELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQKMFPPVALGEIV
ISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMKLKEDECLEILQGL
>Mature_141_residues
MNCKILFRKELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQKMFPPVALGEIV
ISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMKLKEDECLEILQGL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=103, Percent_Identity=35.9223300970874, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_LEPIC (Q72QK8)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_002039.1
- ProteinModelPortal:   Q72QK8
- SMR:   Q72QK8
- GeneID:   2770423
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC12105
- NMPDR:   fig|267671.1.peg.2039
- HOGENOM:   HBG734136
- OMA:   ELNDSEC
- ProtClustDB:   CLSK574015
- BioCyc:   LINT267671:LIC_12105-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16317; Mature: 16317

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCKILFRKELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKIL
CCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHC
PKNTSSDQKMFPPVALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DKEEHIMKLKEDECLEILQGL
CHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MNCKILFRKELNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKIL
CCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHC
PKNTSSDQKMFPPVALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
DKEEHIMKLKEDECLEILQGL
CHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA