| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is sdhB
Identifier: 45657856
GI number: 45657856
Start: 2413610
End: 2414341
Strand: Direct
Name: sdhB
Synonym: LIC12003
Alternate gene names: 45657856
Gene position: 2413610-2414341 (Clockwise)
Preceding gene: 45657855
Following gene: 45657859
Centisome position: 56.43
GC content: 46.17
Gene sequence:
>732_bases ATGGATCTGAAACTCAAAGTCTGGAGACAAAAAAGCGGAGAAACCAAGGGAAAAATCGTAGATTACAACGCGAAAGATAT TTCCCCCAATATGTCGTTCTTAGAAATGCTCGATGTGGTCAACGAAGAACTAATCACCAAGGGAGAAGATCCAATCGCGT TCGAACACGACTGCCGAGAAGGAATCTGCGGTTCTTGCAACCTGATGATCAACGGACAAGCACACGGACCTCATCAAGGA GTCACTTCTTGTCAATTGCACATGCGTTCCTTTAAAGACGGTGACACCGTTTATGTGGAACCTTGGAGAGCGAAGGCATT CCCCGTTCTTAAGGATCTCGTTGTTGATCGTAGCGCGTTTGATCGAATCATCCAAGCTGGTGGTTTTATCAGCGTAAACA CCGGAGGAGCTCCGGACGCAAACGCATTACCAATTCCTAAAGTAGACGCGGACGTTTCCATGGATGCGGCTACTTGTATC GGATGCGGGGCCTGCGTGGCTTCTTGTAAAAACGCAAGCGCGATGTTGTTCGTTTCCGCAAAGATCACCCACCTCGGTTT GTTACCACAAGGAAAAGTGGAACAAAAAGAAAGAGTGAAAAAAATGATCAACGCAATGGACCAAGAAGGTTTTGGAAACT GCACCAACCAATACGAGTGCGAAGCGGTTTGTCCAAAATCGATCAAGAGAGATTTTATCCGAACGTTAAACAGGGATTAT ATCCTCTCGTAA
Upstream 100 bases:
>100_bases CCACAGCTTGGGAATTTAACGGAGTCGGTAAAAAGCCAACCGAACACAGAGAAAAATTGGAGTTCGAAAACGTTCACCTC GCCACAAGGAGTTATAAATA
Downstream 100 bases:
>100_bases TCGATCGCGATTCATTTCGAAAACGATTTTTCAAACGTTCGTAGTTTTTGTTCCGAAAGGAAAAGAAACCGATCTTAAAA ACTTGAATCGAGCGAAAGCC
Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MDLKLKVWRQKSGETKGKIVDYNAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG VTSCQLHMRSFKDGDTVYVEPWRAKAFPVLKDLVVDRSAFDRIIQAGGFISVNTGGAPDANALPIPKVDADVSMDAATCI GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDQEGFGNCTNQYECEAVCPKSIKRDFIRTLNRDY ILS
Sequences:
>Translated_243_residues MDLKLKVWRQKSGETKGKIVDYNAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG VTSCQLHMRSFKDGDTVYVEPWRAKAFPVLKDLVVDRSAFDRIIQAGGFISVNTGGAPDANALPIPKVDADVSMDAATCI GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDQEGFGNCTNQYECEAVCPKSIKRDFIRTLNRDY ILS >Mature_243_residues MDLKLKVWRQKSGETKGKIVDYNAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG VTSCQLHMRSFKDGDTVYVEPWRAKAFPVLKDLVVDRSAFDRIIQAGGFISVNTGGAPDANALPIPKVDADVSMDAATCI GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDQEGFGNCTNQYECEAVCPKSIKRDFIRTLNRDY ILS
Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]
COG id: COG0479
COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790596, Length=223, Percent_Identity=26.9058295964126, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR012675 - InterPro: IPR001041 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR004489 [H]
Pfam domain/function: NA
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 26650; Mature: 26650
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLKLKVWRQKSGETKGKIVDYNAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCRE CCCEEEEHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHC GICGSCNLMINGQAHGPHQGVTSCQLHMRSFKDGDTVYVEPWRAKAFPVLKDLVVDRSAF CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCHHHH DRIIQAGGFISVNTGGAPDANALPIPKVDADVSMDAATCIGCGACVASCKNASAMLFVSA HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE KITHLGLLPQGKVEQKERVKKMINAMDQEGFGNCTNQYECEAVCPKSIKRDFIRTLNRDY EHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCC ILS CCC >Mature Secondary Structure MDLKLKVWRQKSGETKGKIVDYNAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCRE CCCEEEEHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHC GICGSCNLMINGQAHGPHQGVTSCQLHMRSFKDGDTVYVEPWRAKAFPVLKDLVVDRSAF CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCHHHH DRIIQAGGFISVNTGGAPDANALPIPKVDADVSMDAATCIGCGACVASCKNASAMLFVSA HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE KITHLGLLPQGKVEQKERVKKMINAMDQEGFGNCTNQYECEAVCPKSIKRDFIRTLNRDY EHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCC ILS CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3027051; 8969504; 9384377; 3114423 [H]