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The map label for this gene is sdhC

Identifier: 45657854

GI number: 45657854

Start: 2410998

End: 2411678

Strand: Direct

Name: sdhC

Synonym: LIC12001

Alternate gene names: NA

Gene position: 2410998-2411678 (Clockwise)

Preceding gene: 45657847

Following gene: 45657855

Centisome position: 56.37

GC content: 41.7

Gene sequence:

>681_bases
ATGGATTTTAAGGCTGGATACCTCCGGTCTTCCATCGGGAGAAAAACTCTCGTGGCAGCAACCGGACTTGTTTATTTCGG
CTTTGTGGTTGTTCATATGTTAGGAAATCTTCAGATCTTCCTTGGACAGGAAAAAATCAACGCATATGGTCAATCGCTCA
GAGATATTGCCCCTCTTCTTTGGGTAGCCAGAATTATTTTAATTGTTAGTTTTATCATCCACGTTTACTACGCGATAAAA
CTTACAATTGAAAATAGACAGGCCCGCCCAGTTCCCTACTCTAAAAAGAACACAGTGCAAGCGACACTCGCTTCTAGAAC
GATGGCTCTAACTGGGCTTTTAATTTTTTCCTTCATCGTATATCACCTTCTTCACTTCACACTCGGAGTTACCAATCCAG
ATCATTTTGCAATGACGGATGCAAAAGGAAGACATGACATTTATACGATGGTAGTTCTAGGTTTTCAAAACCCAATCGTT
GCGAGTTCGTACATCTTTGCGATGTTATTACTTGCTACGCATATCAGCCACGGAGTGGCGAGTGTGTTCCAAACATTGGG
ACTGAACACTCCTTACTTTAGTGGTAAAATCAAAGCGGGAGCGATTTTATTCGCGCTTTTGATCTTTATAGGCAATACTT
CTATCCCACTTTCGATTTTGCTGGGATACGTTCATCCGTAA

Upstream 100 bases:

>100_bases
TTTTAGAAAGTACGGGTTTGTTCTAATTTTAAACCCATCTTTTTTGTTCATTCAAATTTTTCGATGAATTCTTTCCACCA
ATCAAATAGGAGAAAATGGT

Downstream 100 bases:

>100_bases
TTCTTTGGAGAAACTTTTATGAGTTTAGATTCTAAAATTCCAAACGGCTCGATTGATAAAAAATGGTCCAATCACAAGGC
TAATATTAAGTTAGTCAATC

Product: succinate dehydrogenase cytochrome subunit B

Products: fumarate; reduced acceptor

Alternate protein names: Succinate Dehydrogenase Subunit C; Cytochrome B Subunit; Succinate Dehydrogenase Subunit; Succinate Dehydrogenase Cytochrome; Fumarate Reductase Cytochrome B Subunit; Succinate Dehydrogenase Cytochrome Subunit; SuccinateQuinone Oxidoreductase-Like Protein; Succinate Dehydrogenase/Fumarate Reductase Cytochrome; Succinate Dehydrogenase Cytochrome Subunit B; Succinate Dehydrogenease Cytochrome B Subunit; Succinate Dehydrogenase Cytochrome B Subunit SdhC; Succinate Dehydrogenase Subunit C/Fumarate Reductase

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDFKAGYLRSSIGRKTLVAATGLVYFGFVVVHMLGNLQIFLGQEKINAYGQSLRDIAPLLWVARIILIVSFIIHVYYAIK
LTIENRQARPVPYSKKNTVQATLASRTMALTGLLIFSFIVYHLLHFTLGVTNPDHFAMTDAKGRHDIYTMVVLGFQNPIV
ASSYIFAMLLLATHISHGVASVFQTLGLNTPYFSGKIKAGAILFALLIFIGNTSIPLSILLGYVHP

Sequences:

>Translated_226_residues
MDFKAGYLRSSIGRKTLVAATGLVYFGFVVVHMLGNLQIFLGQEKINAYGQSLRDIAPLLWVARIILIVSFIIHVYYAIK
LTIENRQARPVPYSKKNTVQATLASRTMALTGLLIFSFIVYHLLHFTLGVTNPDHFAMTDAKGRHDIYTMVVLGFQNPIV
ASSYIFAMLLLATHISHGVASVFQTLGLNTPYFSGKIKAGAILFALLIFIGNTSIPLSILLGYVHP
>Mature_226_residues
MDFKAGYLRSSIGRKTLVAATGLVYFGFVVVHMLGNLQIFLGQEKINAYGQSLRDIAPLLWVARIILIVSFIIHVYYAIK
LTIENRQARPVPYSKKNTVQATLASRTMALTGLLIFSFIVYHLLHFTLGVTNPDHFAMTDAKGRHDIYTMVVLGFQNPIV
ASSYIFAMLLLATHISHGVASVFQTLGLNTPYFSGKIKAGAILFALLIFIGNTSIPLSILLGYVHP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.3.99.1

Molecular weight: Translated: 24961; Mature: 24961

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKAGYLRSSIGRKTLVAATGLVYFGFVVVHMLGNLQIFLGQEKINAYGQSLRDIAPLL
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHH
WVARIILIVSFIIHVYYAIKLTIENRQARPVPYSKKNTVQATLASRTMALTGLLIFSFIV
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YHLLHFTLGVTNPDHFAMTDAKGRHDIYTMVVLGFQNPIVASSYIFAMLLLATHISHGVA
HHHHHHHHCCCCCCCEEECCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SVFQTLGLNTPYFSGKIKAGAILFALLIFIGNTSIPLSILLGYVHP
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDFKAGYLRSSIGRKTLVAATGLVYFGFVVVHMLGNLQIFLGQEKINAYGQSLRDIAPLL
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHH
WVARIILIVSFIIHVYYAIKLTIENRQARPVPYSKKNTVQATLASRTMALTGLLIFSFIV
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YHLLHFTLGVTNPDHFAMTDAKGRHDIYTMVVLGFQNPIVASSYIFAMLLLATHISHGVA
HHHHHHHHCCCCCCCEEECCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SVFQTLGLNTPYFSGKIKAGAILFALLIFIGNTSIPLSILLGYVHP
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA