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The map label for this gene is rsmE [H]

Identifier: 45657713

GI number: 45657713

Start: 2244055

End: 2244828

Strand: Direct

Name: rsmE [H]

Synonym: LIC11850

Alternate gene names: 45657713

Gene position: 2244055-2244828 (Clockwise)

Preceding gene: 45657712

Following gene: 45657715

Centisome position: 52.47

GC content: 31.27

Gene sequence:

>774_bases
TTGAATCTACTCATTTGTAAAAAAGAATGGAGAATTGAAAAATCGAGTCGATTTTCCATTCAAGACCCTAAAAAAATCAA
TCATATATGCAATATTTTGAATAAACGAGAAGGTGATCGTTTAAAAGCGGGACTGATAGATACAGATCTAGGACAATTCT
TTCTTGAAAAAATAAATAAGAATCAAATCGTAGGAATCTACAAACCAATCTTAGTTCCACGACCTCGTTTTCCAGAAGTC
CATATTCTAATGGCAATCAATCGGCCCCCTACGATTCGAAAAATCCTTCAGTTAGCAGGAACTTGGGGAGTTACATCAAT
CCATTTTTTTATCAGTAAAAATTCTAGAAAAGATTATCTAACCTCTCCTATTTGGAACCAAAACGAAATTGAATCCGAAC
TTTTAGAAGGTATGGAACAAGGAAAAAATATATTTCTTCCTAAAGTTTGTTTCGACTTTCAAAATCAAATCGAAAATATT
CTTATAAAAAAATTAAAAGAATTAGATTTTACATTTCGTTTTATTTTAGATCGAAAAGGTTTTACATTTACTCAGGTATT
TAAAGAAAAAAAAATAGATTCAAATTTTGGAATGTATTCTAAAACACCTCGCGTCTTAGCCGTGATCGGTCCAGAGAGTG
GATTTATTCCAAATGAAATCTACTTTTGGAAACGTTTTGGTTTTAAAAAACTAAATCTCTCCGATCGAATACTTCGCACC
GAAACAGCTTTTGCGTTTTTACTTGCAAGACTTGAAGAAAAAACAATTTTCTAA

Upstream 100 bases:

>100_bases
AAATTCAAATCCGTTCCCAGATCCCCCGGAAACTCAACCTCAAGAAATTCAACCGGAAGAACAACCTATTCCCAAGTTTG
AAATTTAATACGACTTACTT

Downstream 100 bases:

>100_bases
AAAGATAAACCACCGGAAAATAATATTTTCTGTTCGTCTTGAGCTTCGTATTGACTGGAAGCCGTGTCATAAACCCATTT
ACGTATATTCTGAAGTCTGA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNLLICKKEWRIEKSSRFSIQDPKKINHICNILNKREGDRLKAGLIDTDLGQFFLEKINKNQIVGIYKPILVPRPRFPEV
HILMAINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNIFLPKVCFDFQNQIENI
LIKKLKELDFTFRFILDRKGFTFTQVFKEKKIDSNFGMYSKTPRVLAVIGPESGFIPNEIYFWKRFGFKKLNLSDRILRT
ETAFAFLLARLEEKTIF

Sequences:

>Translated_257_residues
MNLLICKKEWRIEKSSRFSIQDPKKINHICNILNKREGDRLKAGLIDTDLGQFFLEKINKNQIVGIYKPILVPRPRFPEV
HILMAINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNIFLPKVCFDFQNQIENI
LIKKLKELDFTFRFILDRKGFTFTQVFKEKKIDSNFGMYSKTPRVLAVIGPESGFIPNEIYFWKRFGFKKLNLSDRILRT
ETAFAFLLARLEEKTIF
>Mature_257_residues
MNLLICKKEWRIEKSSRFSIQDPKKINHICNILNKREGDRLKAGLIDTDLGQFFLEKINKNQIVGIYKPILVPRPRFPEV
HILMAINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYLTSPIWNQNEIESELLEGMEQGKNIFLPKVCFDFQNQIENI
LIKKLKELDFTFRFILDRKGFTFTQVFKEKKIDSNFGMYSKTPRVLAVIGPESGFIPNEIYFWKRFGFKKLNLSDRILRT
ETAFAFLLARLEEKTIF

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 30253; Mature: 30253

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLICKKEWRIEKSSRFSIQDPKKINHICNILNKREGDRLKAGLIDTDLGQFFLEKINK
CCEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHCCC
NQIVGIYKPILVPRPRFPEVHILMAINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYL
CCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
TSPIWNQNEIESELLEGMEQGKNIFLPKVCFDFQNQIENILIKKLKELDFTFRFILDRKG
CCCCCCHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCC
FTFTQVFKEKKIDSNFGMYSKTPRVLAVIGPESGFIPNEIYFWKRFGFKKLNLSDRILRT
CHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHEEHHCCCEEECCCHHHHHH
ETAFAFLLARLEEKTIF
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLICKKEWRIEKSSRFSIQDPKKINHICNILNKREGDRLKAGLIDTDLGQFFLEKINK
CCEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHCCC
NQIVGIYKPILVPRPRFPEVHILMAINRPPTIRKILQLAGTWGVTSIHFFISKNSRKDYL
CCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
TSPIWNQNEIESELLEGMEQGKNIFLPKVCFDFQNQIENILIKKLKELDFTFRFILDRKG
CCCCCCHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCC
FTFTQVFKEKKIDSNFGMYSKTPRVLAVIGPESGFIPNEIYFWKRFGFKKLNLSDRILRT
CHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHEEHHCCCEEECCCHHHHHH
ETAFAFLLARLEEKTIF
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]