Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 45657680

GI number: 45657680

Start: 2208838

End: 2209173

Strand: Reverse

Name: clpS

Synonym: LIC11815

Alternate gene names: 45657680

Gene position: 2209173-2208838 (Counterclockwise)

Preceding gene: 45657681

Following gene: 45657679

Centisome position: 51.65

GC content: 39.58

Gene sequence:

>336_bases
ATGAGTGATATCTTTCGATTCGATACGGAAGAACAAACTCTTACAAAAGAGAAGATAAAATTAAAAAAACCTTCTAAATA
TAGAGTTATTATACTGAACGACGATTTTACTCCTATGGAATTTGTTGTTTGGATTTTACAGATGGTCTTTCATAGAAGCC
GTGCCGAAAGTCAACAGATCATGTTGAAAGCTCATATTACTGGTAAGGCGTTATGCGGAGTTTATTCTCACGACGTGGCA
AGAACCAAAGTGGCGCAAGTGCAACAATTGGCGGAACAACATGGATACCCGCTTCATTGTACGATGGAAGTGGAGGAAGG
AGAGGAGGAGTCATGA

Upstream 100 bases:

>100_bases
AAACAAATGAACATTCCCCCTTAAAAAGAGTTTATACGAATGGCTTATTTGTAAATGAAGTTCTGAATCTTAGACCTACG
GATCAGGAGAGTTATGAATC

Downstream 100 bases:

>100_bases
TTCTTACGGAAGAAATGGAACGTACTTTAAGAAAGGCTTGGGAAGAAGCTAAAAAAAGAAGAAACGAATTTATTACCTTG
GAACATATACTTTTAGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQIMLKAHITGKALCGVYSHDVA
RTKVAQVQQLAEQHGYPLHCTMEVEEGEEES

Sequences:

>Translated_111_residues
MSDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQIMLKAHITGKALCGVYSHDVA
RTKVAQVQQLAEQHGYPLHCTMEVEEGEEES
>Mature_110_residues
SDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQIMLKAHITGKALCGVYSHDVAR
TKVAQVQQLAEQHGYPLHCTMEVEEGEEES

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=104, Percent_Identity=46.1538461538462, Blast_Score=97, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_LEPIC (Q72RD1)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001766.1
- ProteinModelPortal:   Q72RD1
- SMR:   Q72RD1
- GeneID:   2770460
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11815
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   CLSK574210
- BioCyc:   LINT267671:LIC_11815-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12942; Mature: 12811

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQI
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHE
MLKAHITGKALCGVYSHDVARTKVAQVQQLAEQHGYPLHCTMEVEEGEEES
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQI
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHE
MLKAHITGKALCGVYSHDVARTKVAQVQQLAEQHGYPLHCTMEVEEGEEES
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA