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The map label for this gene is ygcU [H]

Identifier: 45657542

GI number: 45657542

Start: 2036838

End: 2038529

Strand: Reverse

Name: ygcU [H]

Synonym: LIC11674

Alternate gene names: 45657542

Gene position: 2038529-2036838 (Counterclockwise)

Preceding gene: 45657544

Following gene: 45657541

Centisome position: 47.66

GC content: 37.23

Gene sequence:

>1692_bases
ATGTTTTATACAGAACTTAACTCTAAGATAGATTATACAAGAGAGAATCTAAGATGGAATTCTTGGGGAGCTTACGGTCA
GGATTTCTTTAAAGTTGGACAGATGCAGGAAATTCTAAAATTTTTATCAGACGAACTTAAAATTTCGGAAATACGAAAAA
CACCTCCAGTCGCTTTGGAAGAAATTACTCTTCCTAAATCTTCTTTCACACAGACTCAGATTCGAGATTTGAGTAAAATC
AGCGGAGCAAAACATTTTTCGATCGAAAGAAGAGAAAGAATTCTTCATTCGGCCGGAAGAAGTTATTACGATGTATTCAG
GCTTTCATTCAATTCTCTTAAAAATTTCGTAGACGGAGTGATTTATCCCGGTAAAGAATCTGAAATTTTCAAAATTTTAG
AATACTGTTCTAAAAATCACATCACGATAATTCCTTATGGAGGTGGTTCTTCTGTAGTAGGAGGTTTAGAAGTAATCAAA
GCTAAAGGACAAAAACAAGTCCTTTCTTTAGATACTACTCGAATGAATTCTCTTTTATCCTTAGATTTGGAAAGTCATTT
AGCCACGTTTCAAACCGGGATCTACGGTCCTCCTCTAGAAATATCTTTAAATGAAAAAGGATTCACGCTAGGTCATTTTC
CTCAGTCTTTCGAATATTCTACGTTAGGTGGTTGGATCGCAGCGAGAAGCGCGGGACAACAATCAAATCGATATGGTAAG
ATTGAGGAAATTCTTACTAGTTTAAAAGTAGTAACTCCAATGGGCACTGTCGAAACTCTAAAAGAGCCAGCTTCTTCTAC
GGGTCCGGAGTTAAATCGAATTTTTGCGGGAAGTGAAGGTTTGCTCGGAATTATCACAGAGGCTACAATCAAAGTTCACA
AACTTCCGGAAACTAGAAAGTATTTTGGAATTCTATTTCCTAATTTTGAGTCAGGAGTTAATTTTATCCGAGAAATCAAT
CATAGGGAAATTCCAACTTCTATGATCCGTCTCTCCGATCAAAATGAAACTCGTCTTTATCAAACGTTAGGCACTCTTGG
TAAAAAAAATACCCTAACCCGCTGGATCAAGAACCAAGTTCAAAATTTAATTTTAAAATGGAATTCCCTTGGCAGAGACA
AATGTGTAGTCTTACTCGGATTAGACGGTGCTCGAGAAGAAGTATCTCGAAACTTTTCAAGAATCAAATCGATTCTTCGC
AAACATAGAGGACTTTACGCAGGAACCCATTTAGGAGAACAATGGATTCATTCCAGATACAACATGCCTTTCCTTAGAAA
TCATTTAATGGAAAACGGAATCGGTGTGGATACGATGGAGACATCCACTACATACGATCGGGTTCTTCAACTTCATAAAG
AAGGAATTGACTCTTTGGAAAAATCAATCCCAGGTTCGATATCTATGTGTCATATCTCTCATAGTTATCATGAAGGAGCT
TGTTTATATTTTACCATTCTCTTTCCTATGGATGAAAAGAAACCCGCAGAACAGTGGTTCAAGATGAAACGTTCAGTTTC
AGAAACTTTTTTTCAAAATGGCGCTCCGATCTCCCATCATCACGGCGTCGGATTTGATCACAAAGTTTGGTATGAAAAAG
CAACTTCTAAACCTGCGTTATCCGCCTTGAAGGCATTTAAGAAGGAAATGGATCAAAGGGAAATTCTGAATCCGGGAAAA
TTGTTTCATTGA

Upstream 100 bases:

>100_bases
TATTTATTTTTTTGATTTGTTTCAAAATATGATCTTCTATTTGAAAAAAATTAAACGTTAATGAACATTACACAGTTATC
ACTGGAGATTTTCAAAGCAT

Downstream 100 bases:

>100_bases
GTAGAAATTTTTTAATAGATTCTTTTCAATCAACGAAAGACGGATCAAAATGCGGAATCAATCCAATGTCTAAAAAATCC
AAGACGTTTTGGAACAAACT

Product: alkylglycerone-phosphate synthase

Products: alkyl-glycerone 3-phosphate; long-chain acid anion

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MFYTELNSKIDYTRENLRWNSWGAYGQDFFKVGQMQEILKFLSDELKISEIRKTPPVALEEITLPKSSFTQTQIRDLSKI
SGAKHFSIERRERILHSAGRSYYDVFRLSFNSLKNFVDGVIYPGKESEIFKILEYCSKNHITIIPYGGGSSVVGGLEVIK
AKGQKQVLSLDTTRMNSLLSLDLESHLATFQTGIYGPPLEISLNEKGFTLGHFPQSFEYSTLGGWIAARSAGQQSNRYGK
IEEILTSLKVVTPMGTVETLKEPASSTGPELNRIFAGSEGLLGIITEATIKVHKLPETRKYFGILFPNFESGVNFIREIN
HREIPTSMIRLSDQNETRLYQTLGTLGKKNTLTRWIKNQVQNLILKWNSLGRDKCVVLLGLDGAREEVSRNFSRIKSILR
KHRGLYAGTHLGEQWIHSRYNMPFLRNHLMENGIGVDTMETSTTYDRVLQLHKEGIDSLEKSIPGSISMCHISHSYHEGA
CLYFTILFPMDEKKPAEQWFKMKRSVSETFFQNGAPISHHHGVGFDHKVWYEKATSKPALSALKAFKKEMDQREILNPGK
LFH

Sequences:

>Translated_563_residues
MFYTELNSKIDYTRENLRWNSWGAYGQDFFKVGQMQEILKFLSDELKISEIRKTPPVALEEITLPKSSFTQTQIRDLSKI
SGAKHFSIERRERILHSAGRSYYDVFRLSFNSLKNFVDGVIYPGKESEIFKILEYCSKNHITIIPYGGGSSVVGGLEVIK
AKGQKQVLSLDTTRMNSLLSLDLESHLATFQTGIYGPPLEISLNEKGFTLGHFPQSFEYSTLGGWIAARSAGQQSNRYGK
IEEILTSLKVVTPMGTVETLKEPASSTGPELNRIFAGSEGLLGIITEATIKVHKLPETRKYFGILFPNFESGVNFIREIN
HREIPTSMIRLSDQNETRLYQTLGTLGKKNTLTRWIKNQVQNLILKWNSLGRDKCVVLLGLDGAREEVSRNFSRIKSILR
KHRGLYAGTHLGEQWIHSRYNMPFLRNHLMENGIGVDTMETSTTYDRVLQLHKEGIDSLEKSIPGSISMCHISHSYHEGA
CLYFTILFPMDEKKPAEQWFKMKRSVSETFFQNGAPISHHHGVGFDHKVWYEKATSKPALSALKAFKKEMDQREILNPGK
LFH
>Mature_563_residues
MFYTELNSKIDYTRENLRWNSWGAYGQDFFKVGQMQEILKFLSDELKISEIRKTPPVALEEITLPKSSFTQTQIRDLSKI
SGAKHFSIERRERILHSAGRSYYDVFRLSFNSLKNFVDGVIYPGKESEIFKILEYCSKNHITIIPYGGGSSVVGGLEVIK
AKGQKQVLSLDTTRMNSLLSLDLESHLATFQTGIYGPPLEISLNEKGFTLGHFPQSFEYSTLGGWIAARSAGQQSNRYGK
IEEILTSLKVVTPMGTVETLKEPASSTGPELNRIFAGSEGLLGIITEATIKVHKLPETRKYFGILFPNFESGVNFIREIN
HREIPTSMIRLSDQNETRLYQTLGTLGKKNTLTRWIKNQVQNLILKWNSLGRDKCVVLLGLDGAREEVSRNFSRIKSILR
KHRGLYAGTHLGEQWIHSRYNMPFLRNHLMENGIGVDTMETSTTYDRVLQLHKEGIDSLEKSIPGSISMCHISHSYHEGA
CLYFTILFPMDEKKPAEQWFKMKRSVSETFFQNGAPISHHHGVGFDHKVWYEKATSKPALSALKAFKKEMDQREILNPGK
LFH

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=569, Percent_Identity=31.1072056239016, Blast_Score=270, Evalue=3e-72,
Organism=Homo sapiens, GI37595756, Length=222, Percent_Identity=25.2252252252252, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI119964728, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI48994907, Length=458, Percent_Identity=28.6026200873362, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1789351, Length=448, Percent_Identity=21.4285714285714, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17556096, Length=591, Percent_Identity=30.7952622673435, Blast_Score=282, Evalue=3e-76,
Organism=Caenorhabditis elegans, GI71992373, Length=457, Percent_Identity=21.2253829321663, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71992381, Length=462, Percent_Identity=21.8614718614719, Blast_Score=83, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71992392, Length=357, Percent_Identity=22.6890756302521, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17534361, Length=231, Percent_Identity=27.7056277056277, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320027, Length=269, Percent_Identity=27.5092936802974, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24653753, Length=485, Percent_Identity=31.7525773195876, Blast_Score=278, Evalue=5e-75,
Organism=Drosophila melanogaster, GI18921117, Length=194, Percent_Identity=26.8041237113402, Blast_Score=74, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639277, Length=194, Percent_Identity=26.8041237113402, Blast_Score=74, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639275, Length=194, Percent_Identity=26.8041237113402, Blast_Score=74, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: 2.5.1.26

Molecular weight: Translated: 64073; Mature: 64073

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYTELNSKIDYTRENLRWNSWGAYGQDFFKVGQMQEILKFLSDELKISEIRKTPPVALE
CCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EITLPKSSFTQTQIRDLSKISGAKHFSIERRERILHSAGRSYYDVFRLSFNSLKNFVDGV
HEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCE
IYPGKESEIFKILEYCSKNHITIIPYGGGSSVVGGLEVIKAKGQKQVLSLDTTRMNSLLS
ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHH
LDLESHLATFQTGIYGPPLEISLNEKGFTLGHFPQSFEYSTLGGWIAARSAGQQSNRYGK
HHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
IEEILTSLKVVTPMGTVETLKEPASSTGPELNRIFAGSEGLLGIITEATIKVHKLPETRK
HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEECCEEEEECCCCCHH
YFGILFPNFESGVNFIREINHREIPTSMIRLSDQNETRLYQTLGTLGKKNTLTRWIKNQV
HHEEECCCHHHHHHHHHHCCCCCCCHHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHHH
QNLILKWNSLGRDKCVVLLGLDGAREEVSRNFSRIKSILRKHRGLYAGTHLGEQWIHSRY
HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
NMPFLRNHLMENGIGVDTMETSTTYDRVLQLHKEGIDSLEKSIPGSISMCHISHSYHEGA
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
CLYFTILFPMDEKKPAEQWFKMKRSVSETFFQNGAPISHHHGVGFDHKVWYEKATSKPAL
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHH
SALKAFKKEMDQREILNPGKLFH
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFYTELNSKIDYTRENLRWNSWGAYGQDFFKVGQMQEILKFLSDELKISEIRKTPPVALE
CCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EITLPKSSFTQTQIRDLSKISGAKHFSIERRERILHSAGRSYYDVFRLSFNSLKNFVDGV
HEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCE
IYPGKESEIFKILEYCSKNHITIIPYGGGSSVVGGLEVIKAKGQKQVLSLDTTRMNSLLS
ECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCHHEEEHHHHHHHHHHH
LDLESHLATFQTGIYGPPLEISLNEKGFTLGHFPQSFEYSTLGGWIAARSAGQQSNRYGK
HHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
IEEILTSLKVVTPMGTVETLKEPASSTGPELNRIFAGSEGLLGIITEATIKVHKLPETRK
HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHCCCCCCCEEEEECCEEEEECCCCCHH
YFGILFPNFESGVNFIREINHREIPTSMIRLSDQNETRLYQTLGTLGKKNTLTRWIKNQV
HHEEECCCHHHHHHHHHHCCCCCCCHHHHEECCCCHHHHHHHHHHCCCCHHHHHHHHHHH
QNLILKWNSLGRDKCVVLLGLDGAREEVSRNFSRIKSILRKHRGLYAGTHLGEQWIHSRY
HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
NMPFLRNHLMENGIGVDTMETSTTYDRVLQLHKEGIDSLEKSIPGSISMCHISHSYHEGA
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
CLYFTILFPMDEKKPAEQWFKMKRSVSETFFQNGAPISHHHGVGFDHKVWYEKATSKPAL
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHH
SALKAFKKEMDQREILNPGKLFH
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 1-acyl-glycerone 3-phosphate; long-chain alcohol

Specific reaction: 1-acyl-glycerone 3-phosphate + a long-chain alcohol = an alkyl-glycerone 3-phosphate + a long-chain acid anion

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]