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The map label for this gene is 45657544

Identifier: 45657544

GI number: 45657544

Start: 2040366

End: 2041019

Strand: Reverse

Name: 45657544

Synonym: LIC11676

Alternate gene names: NA

Gene position: 2041019-2040366 (Counterclockwise)

Preceding gene: 45657545

Following gene: 45657542

Centisome position: 47.72

GC content: 33.18

Gene sequence:

>654_bases
GTGCAAAAAAAAATCGATATTCAGCATTATTTTGTACACTACAAATTATCAAAAAAAATATCCCGAGGGAATTCGATGCC
TAAGATAGTAAATCATGAAAAATACAAAACGGAGATACTAGCCAAGTGTGTAGATATTCTTGCAAGAAGAGGATATTCCG
CGGTTTCTATGAGAGAAATCGCGGCGGAGTTGGACGTTTCCACAGGAACATTGTATCACTATTTCGCGACCAAAGAAGAT
ATATTTAAGGAACTAGTTAAATTCGTATTAAATAAAGATATTGAAGAATTACAAATTCACTCTAAAGGAGATCTAGGACA
AACATTAGAAACGAGAATAGAATCCCTTTTTCAAATGGTTCAAGCAAGAGAAGCGTATTTTCAAAATTTACTCTACATCA
TTTGTGACGTTTCCAGATTAAAAAATCATGAAGAAGAAAAATCTTTAATCGCAGATACCATTAAAGAATACGTTCATATC
ATAACAAAACATCTAGGAGTTACAAACCCCGCTCTCAACCGAATTCTAATCAGCGTAATTTTAGGAACTGTGGTTCAAAG
AATTCTAGACTCAGAGGCGATTAGTCTTTCGGAAACTTCAGATGTTGTTAAAGATTTTTTATCAATCCTTCTTTCCAATT
CATTTACATTCTAA

Upstream 100 bases:

>100_bases
TCTTTCTTTAAGGATCTTCAATTTTTGATGATCGGCCCAATCTGGTTACTTGGATTTATCTATAAAAAGATGAAAATCGC
CTATTGATCGTTCCAATTTA

Downstream 100 bases:

>100_bases
TTTTCTAATAAATCTTATAACGATCTTTTACCGTTTTGATTTCTTGACGGATTTGATTCTGGTTCCAACCAAGATGTCTT
CCTAAGGATCTGAAAAGCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MQKKIDIQHYFVHYKLSKKISRGNSMPKIVNHEKYKTEILAKCVDILARRGYSAVSMREIAAELDVSTGTLYHYFATKED
IFKELVKFVLNKDIEELQIHSKGDLGQTLETRIESLFQMVQAREAYFQNLLYIICDVSRLKNHEEEKSLIADTIKEYVHI
ITKHLGVTNPALNRILISVILGTVVQRILDSEAISLSETSDVVKDFLSILLSNSFTF

Sequences:

>Translated_217_residues
MQKKIDIQHYFVHYKLSKKISRGNSMPKIVNHEKYKTEILAKCVDILARRGYSAVSMREIAAELDVSTGTLYHYFATKED
IFKELVKFVLNKDIEELQIHSKGDLGQTLETRIESLFQMVQAREAYFQNLLYIICDVSRLKNHEEEKSLIADTIKEYVHI
ITKHLGVTNPALNRILISVILGTVVQRILDSEAISLSETSDVVKDFLSILLSNSFTF
>Mature_217_residues
MQKKIDIQHYFVHYKLSKKISRGNSMPKIVNHEKYKTEILAKCVDILARRGYSAVSMREIAAELDVSTGTLYHYFATKED
IFKELVKFVLNKDIEELQIHSKGDLGQTLETRIESLFQMVQAREAYFQNLLYIICDVSRLKNHEEEKSLIADTIKEYVHI
ITKHLGVTNPALNRILISVILGTVVQRILDSEAISLSETSDVVKDFLSILLSNSFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24940; Mature: 24940

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKIDIQHYFVHYKLSKKISRGNSMPKIVNHEKYKTEILAKCVDILARRGYSAVSMREI
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AAELDVSTGTLYHYFATKEDIFKELVKFVLNKDIEELQIHSKGDLGQTLETRIESLFQMV
HHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
QAREAYFQNLLYIICDVSRLKNHEEEKSLIADTIKEYVHIITKHLGVTNPALNRILISVI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGTVVQRILDSEAISLSETSDVVKDFLSILLSNSFTF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQKKIDIQHYFVHYKLSKKISRGNSMPKIVNHEKYKTEILAKCVDILARRGYSAVSMREI
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AAELDVSTGTLYHYFATKEDIFKELVKFVLNKDIEELQIHSKGDLGQTLETRIESLFQMV
HHHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
QAREAYFQNLLYIICDVSRLKNHEEEKSLIADTIKEYVHIITKHLGVTNPALNRILISVI
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGTVVQRILDSEAISLSETSDVVKDFLSILLSNSFTF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA