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The map label for this gene is perM [C]

Identifier: 45657464

GI number: 45657464

Start: 1951500

End: 1952630

Strand: Reverse

Name: perM [C]

Synonym: LIC11592

Alternate gene names: 45657464

Gene position: 1952630-1951500 (Counterclockwise)

Preceding gene: 304570508

Following gene: 45657463

Centisome position: 45.65

GC content: 33.69

Gene sequence:

>1131_bases
ATGATCGAACCAATTCACTTCAACCCTGAACCCGGAAAATATACTTTCCTCATTTTTTTTTCTATCTTATTCCTATTTGC
AATCGGTGTTTTCTTTTTAGTATTTCGACCTTATTTATATTCTTCTCTAATGGCACTGATTTTGTACCTTGCAACCAGAA
GACCTCATAAACTTTTAAAAGGATATTTAGGAGAAAAACTTCAGTGGCTCGTACCTTGGATCATGATCACACTCGTATCT
ATGATCGTATTACTTCCATCCTACTTTGTAATTCGTACTTTGATTAGCGAAGCACTTTCCATTCTTTTTAAGTTAAGAAT
TTCATTAAGCGAAGATAAAATTATCGAAACTTTAATGAATTTTGCACTTCTTACAGATTTTATCACGGACAACGAATTTT
TCTGGGTTAAAGTTCCCGAAATATACGGAGAATTTGCAGAAAATTACGTGGATATTCTAAATCTGGACAGTATCTATGGA
ATTTTAAGCAACGCTTCCTCTTTTATTTTAGGAAATATAGAATTACCTACAGGAATTCTAATGAATCTTTTTTTTGCATT
GTTAGTTTTATTCTTTCTTTATCAAGACGGAAAAAAAGTAGAAAGATTCATTTTAGACAACCTTCCCTTTTCCAAACAAT
TAGAAGAACAAGTCGGAAGAAAATTAACTGCAGCAGTTCAAACTGTAATACGAGGAAATCTAATCATATCAATTCTACAA
GGAACAGCGATTTATATTCTTCTATGGATCGCCGGAATTTCTAGCCCGTTTTTATACGCAAGTTTAGCCGCTTTTTTTTC
CATCATTCCGGTTGTAGGCACTTCTGCAGTTTGGCTTCCGATCGGTCTCTACATTCTCTTTTTAGAAAACAATCCTATGA
TGGCCATTTTTTTTATGGGAAGTGGACTATTCTTTTACGTAGTTCTAGAAAATTTTGTAAAACCTAGAATGCTCGATAAA
AAACTGCAAGCACATCCACTTTTAATCTTTTTATCTTTGATCGGAGGAATCAAAGAATTTGGAATTATGGGATTGGTTGT
AGGGCCGGTTACAGTCACGTTAGTTGTCATTTTATGGGATTTTTGGAAATTGTATCGCCGAGAATTGATTTTGAACAAAG
GACATAGATAA

Upstream 100 bases:

>100_bases
AGAAAGCCAAAACAAAAAAGTAATAACGATTCAAATAGAAGCTTTGGAAAACGGAAGTAAAATCAAACTTTTTTATAAAA
ATTCAGGAAGCTAAAAATCC

Downstream 100 bases:

>100_bases
ACATTGGAAGATTCCAAACCTCTTTCCGTTTCGGAAGTTACTAGAATCATTAAAAATCTGATTTCCGGTTCCAAAGATTT
AAAAAATATCTGGGTCCGAG

Product: putative permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MIEPIHFNPEPGKYTFLIFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLKGYLGEKLQWLVPWIMITLVS
MIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMNFALLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYG
ILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIRGNLIISILQ
GTAIYILLWIAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVLENFVKPRMLDK
KLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWDFWKLYRRELILNKGHR

Sequences:

>Translated_376_residues
MIEPIHFNPEPGKYTFLIFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLKGYLGEKLQWLVPWIMITLVS
MIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMNFALLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYG
ILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIRGNLIISILQ
GTAIYILLWIAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVLENFVKPRMLDK
KLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWDFWKLYRRELILNKGHR
>Mature_376_residues
MIEPIHFNPEPGKYTFLIFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLKGYLGEKLQWLVPWIMITLVS
MIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMNFALLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYG
ILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIRGNLIISILQ
GTAIYILLWIAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVLENFVKPRMLDK
KLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWDFWKLYRRELILNKGHR

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 43079; Mature: 43079

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPIHFNPEPGKYTFLIFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GYLGEKLQWLVPWIMITLVSMIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FALLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGIL
HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
MNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIRGNLIISILQ
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTAIYILLWIAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCEEEEEEEC
SGLFFYVVLENFVKPRMLDKKLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWD
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWKLYRRELILNKGHR
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEPIHFNPEPGKYTFLIFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GYLGEKLQWLVPWIMITLVSMIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FALLTDFITDNEFFWVKVPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGIL
HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
MNLFFALLVLFFLYQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIRGNLIISILQ
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTAIYILLWIAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCEEEEEEEC
SGLFFYVVLENFVKPRMLDKKLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWD
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWKLYRRELILNKGHR
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]