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The map label for this gene is yifB [C]

Identifier: 45657439

GI number: 45657439

Start: 1925715

End: 1927244

Strand: Reverse

Name: yifB [C]

Synonym: LIC11566

Alternate gene names: 45657439

Gene position: 1927244-1925715 (Counterclockwise)

Preceding gene: 45657457

Following gene: 45657410

Centisome position: 45.06

GC content: 37.45

Gene sequence:

>1530_bases
ATGAAAAATTCTTGGATCTGTCTCACCGGAGCCAATTTAGAAGGTTTGGATGCATTTGCGGTTGATGTAGAAATCAACCT
CAAACGAGGATTACCCCGTTTTACAATTACTGGACTTGCTGCTCAGTCCATCCGTGAATCTTCGGAAAGGGTGAGAATCG
CTTTAGAAAACAGCGGCTACTCTTGTCCTCTTCAAAATATATTAGTAAATCTAGCTCCTGCTGGAAGAAAAAAGGAAGGA
ACTCTTTTAGATCTTTCCATTGCATGCGGAATTCTTGCGTTAACCGAACAAATCTTTCCCTCCGGAAAATTACAAAAAAC
TCTATTCTTAGGAGAATTAGGTTTAGACGGAAGTTTAAAACCTCTCAAAGGAGTGTTACCAATTCTATCTGGAATTTCTT
CCGAAAAATACGATACTGCAATCGTTCCATTTGAAAATAGAGAAGAAGCAGCCCTTTTACGAAAATTCGAAGTTTATGGA
ATTTCTCATTTGAGAGAACTAGAAGAAGTTTTAGAAAATCGAAGAACCCCCGAGTCAAAATCAAAAATCCAAATTCAAGA
AGTAAACGTCTCAAAAAATTTAGAATTGTATAAAGACCAGATGGTCGCATTTAGAGCAATTGAAATCGCCGCCGCGGGAT
GGCATCATATACTTTTATCTGGACCACCTGGAATTGGTAAAAGCCTTTTAGCAAGAATAACAGGCTTTTTACTTCCTACT
CCCGAAGAAAACGAAGCATTAGATATATTGAAGATTCGATCTGCAATTTCTCCATTGAAAGAATTGATCGCACAAAGACC
TTATCGAGCTCCTCATCACACTACATCAGACATCACTTTGGTGGGAGGTTCTAGAGATTTAAGAATGGGAGAAGTCACTT
TAGCGAATCGAGGAATTTTATTTTTAGATGAACTCGCGGAATATAAATCGGGAATTTTGCAAGCACTCAGAGAACCAATG
GAAGAAGGAAATATAACGGTTTCTAGAATCAGCGGAACCATTGTATATCCCGCCAACTTCTTGTTAGTTGCCGCGACCAA
CCCATGCCCTTGTGGATTTTATGGAAGTAAAGAAGTTCCTTGTGCTTGTAATCTTCAAAAGATCAAAAAATATCAATCTA
CTTATTCTGGACCATTTAGAGATAGAATCGATTTGGAAGTAGAAATTTTTCCTGCTCAAGAAAAAGAAAGAAAACGAATT
TTAATCTCTTTGGAAGAATCTAGAAAAAAAATTCAAAAAGCAGCAGCCATTCAATGGGAAAGGTATCAAGGAAGTGGATT
TTACTTTAACGGACAACTTAGAGGAGAATACGTAAATTTTTATCTACAATTTGATTCCCCTTGTGAAGAGATTTTAGAAA
ATGAAGTGAAAAAAAGAAAAGCGAGCATTCGTAAACTCAACCAGATTCGAAAAGTGGCTAGAACAATTGCGGATTTAGAG
GAAAGTACACTCGTAAAAGAAAAACATCTTCTAGAAGCCCTGAATTTCCAGAATGCCGGAAGATACGTAGAAAACAGGGC
CATCGCTTAA

Upstream 100 bases:

>100_bases
AATTACGTTTTCAATTTTTCGAATAAAAAAACATAAAATCTATATCACAATCGTTCCCCAAGTAAAAGAATAAGAACCGT
ACTTCCATAAGAGGGAAAGT

Downstream 100 bases:

>100_bases
TTCCCGTTAAGCGAGAAGTTTATTTTGCAAGAAAGTGAGAAATTTCCATAGCAATTTTATCGATCGCAAAATCAATATAA
CTAGGATCCTCCAATTTCTT

Product: Mg chelatase subunit ChII

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MKNSWICLTGANLEGLDAFAVDVEINLKRGLPRFTITGLAAQSIRESSERVRIALENSGYSCPLQNILVNLAPAGRKKEG
TLLDLSIACGILALTEQIFPSGKLQKTLFLGELGLDGSLKPLKGVLPILSGISSEKYDTAIVPFENREEAALLRKFEVYG
ISHLRELEEVLENRRTPESKSKIQIQEVNVSKNLELYKDQMVAFRAIEIAAAGWHHILLSGPPGIGKSLLARITGFLLPT
PEENEALDILKIRSAISPLKELIAQRPYRAPHHTTSDITLVGGSRDLRMGEVTLANRGILFLDELAEYKSGILQALREPM
EEGNITVSRISGTIVYPANFLLVAATNPCPCGFYGSKEVPCACNLQKIKKYQSTYSGPFRDRIDLEVEIFPAQEKERKRI
LISLEESRKKIQKAAAIQWERYQGSGFYFNGQLRGEYVNFYLQFDSPCEEILENEVKKRKASIRKLNQIRKVARTIADLE
ESTLVKEKHLLEALNFQNAGRYVENRAIA

Sequences:

>Translated_509_residues
MKNSWICLTGANLEGLDAFAVDVEINLKRGLPRFTITGLAAQSIRESSERVRIALENSGYSCPLQNILVNLAPAGRKKEG
TLLDLSIACGILALTEQIFPSGKLQKTLFLGELGLDGSLKPLKGVLPILSGISSEKYDTAIVPFENREEAALLRKFEVYG
ISHLRELEEVLENRRTPESKSKIQIQEVNVSKNLELYKDQMVAFRAIEIAAAGWHHILLSGPPGIGKSLLARITGFLLPT
PEENEALDILKIRSAISPLKELIAQRPYRAPHHTTSDITLVGGSRDLRMGEVTLANRGILFLDELAEYKSGILQALREPM
EEGNITVSRISGTIVYPANFLLVAATNPCPCGFYGSKEVPCACNLQKIKKYQSTYSGPFRDRIDLEVEIFPAQEKERKRI
LISLEESRKKIQKAAAIQWERYQGSGFYFNGQLRGEYVNFYLQFDSPCEEILENEVKKRKASIRKLNQIRKVARTIADLE
ESTLVKEKHLLEALNFQNAGRYVENRAIA
>Mature_509_residues
MKNSWICLTGANLEGLDAFAVDVEINLKRGLPRFTITGLAAQSIRESSERVRIALENSGYSCPLQNILVNLAPAGRKKEG
TLLDLSIACGILALTEQIFPSGKLQKTLFLGELGLDGSLKPLKGVLPILSGISSEKYDTAIVPFENREEAALLRKFEVYG
ISHLRELEEVLENRRTPESKSKIQIQEVNVSKNLELYKDQMVAFRAIEIAAAGWHHILLSGPPGIGKSLLARITGFLLPT
PEENEALDILKIRSAISPLKELIAQRPYRAPHHTTSDITLVGGSRDLRMGEVTLANRGILFLDELAEYKSGILQALREPM
EEGNITVSRISGTIVYPANFLLVAATNPCPCGFYGSKEVPCACNLQKIKKYQSTYSGPFRDRIDLEVEIFPAQEKERKRI
LISLEESRKKIQKAAAIQWERYQGSGFYFNGQLRGEYVNFYLQFDSPCEEILENEVKKRKASIRKLNQIRKVARTIADLE
ESTLVKEKHLLEALNFQNAGRYVENRAIA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=493, Percent_Identity=35.2941176470588, Blast_Score=263, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 56914; Mature: 56914

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSWICLTGANLEGLDAFAVDVEINLKRGLPRFTITGLAAQSIRESSERVRIALENSGY
CCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHHHHCCCCEEEEEECCCCC
SCPLQNILVNLAPAGRKKEGTLLDLSIACGILALTEQIFPSGKLQKTLFLGELGLDGSLK
CCCHHHHHEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
PLKGVLPILSGISSEKYDTAIVPFENREEAALLRKFEVYGISHLRELEEVLENRRTPESK
HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SKIQIQEVNVSKNLELYKDQMVAFRAIEIAAAGWHHILLSGPPGIGKSLLARITGFLLPT
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCC
PEENEALDILKIRSAISPLKELIAQRPYRAPHHTTSDITLVGGSRDLRMGEVTLANRGIL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECEEEEECCCEE
FLDELAEYKSGILQALREPMEEGNITVSRISGTIVYPANFLLVAATNPCPCGFYGSKEVP
EHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCEEEEEECCCCCCCCCCCCCCC
CACNLQKIKKYQSTYSGPFRDRIDLEVEIFPAQEKERKRILISLEESRKKIQKAAAIQWE
CCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHEEE
RYQGSGFYFNGQLRGEYVNFYLQFDSPCEEILENEVKKRKASIRKLNQIRKVARTIADLE
EECCCCEEEECEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTLVKEKHLLEALNFQNAGRYVENRAIA
HHHHHHHHHHHHHHCCCCCCCHHHCCCCC
>Mature Secondary Structure
MKNSWICLTGANLEGLDAFAVDVEINLKRGLPRFTITGLAAQSIRESSERVRIALENSGY
CCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHHHHCCCCEEEEEECCCCC
SCPLQNILVNLAPAGRKKEGTLLDLSIACGILALTEQIFPSGKLQKTLFLGELGLDGSLK
CCCHHHHHEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
PLKGVLPILSGISSEKYDTAIVPFENREEAALLRKFEVYGISHLRELEEVLENRRTPESK
HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SKIQIQEVNVSKNLELYKDQMVAFRAIEIAAAGWHHILLSGPPGIGKSLLARITGFLLPT
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCC
PEENEALDILKIRSAISPLKELIAQRPYRAPHHTTSDITLVGGSRDLRMGEVTLANRGIL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECEEEEECCCEE
FLDELAEYKSGILQALREPMEEGNITVSRISGTIVYPANFLLVAATNPCPCGFYGSKEVP
EHHHHHHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCEEEEEECCCCCCCCCCCCCCC
CACNLQKIKKYQSTYSGPFRDRIDLEVEIFPAQEKERKRILISLEESRKKIQKAAAIQWE
CCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHEEE
RYQGSGFYFNGQLRGEYVNFYLQFDSPCEEILENEVKKRKASIRKLNQIRKVARTIADLE
EECCCCEEEECEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESTLVKEKHLLEALNFQNAGRYVENRAIA
HHHHHHHHHHHHHHCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]