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The map label for this gene is 45657457

Identifier: 45657457

GI number: 45657457

Start: 1942994

End: 1943596

Strand: Reverse

Name: 45657457

Synonym: LIC11584

Alternate gene names: NA

Gene position: 1943596-1942994 (Counterclockwise)

Preceding gene: 45657460

Following gene: 45657439

Centisome position: 45.44

GC content: 43.95

Gene sequence:

>603_bases
ATGCAGAAAATAGCCCATACGAAACAAGAGATGATTACAGCTGCTCGTAAGTTGATCCAGGCAAAAGGTGTGGCCTCAAC
AGGTCTTATGGAAATTGTTGCAGCAGCTGAAACTTCAAGAGGATCTATCTATCATCATTTTCCGGGCGGGAAAGACGAAC
TGATTTGTTTGGCAATCGAAGAAGCAGCCATTCTCGCGGAACTGGGAATTTTACGCGCAGGAAAGAAAGGAAAAAATGCC
GCCGAAGTAATACAAAAGATTGCATCCCTTTTTCGACAAGTTCCTGAAAATTCTAAATGGCAAGTAGGCTGCCCTGTTGC
AGCAACCGCTATCGAGGGGCATTCTCAATCCAAAATCGTTCGAGACGCCGTAGCAAATGCTTTTTCACGCTGGAGTAAGG
CAATCGAATTTACCCTATCGGAAGCAGGGCTTAAACCGGAAGACGCAAAATCGATTGGGATCGGTATCGTTGCAGCTTTG
GAAGGTGGTTTGTTGTTGGCCCGAGGTTTATCTTCTTCAAAACCTTACGATACAATCATTGATTTGATCATTGCTGGGGT
TGCAACCAAAGATAAAAATCCACCAAAAAATAAACAATCCTGA

Upstream 100 bases:

>100_bases
TAAAATATGATTATTTGTACAGAAAATTTATCTATAAAGCCATTTTAACCGTAAAACATTTCCGGAACTCCATTGGCTCA
TTTTAGGGAAAAATGATGAA

Downstream 100 bases:

>100_bases
AGATATTCGAATTCATTTTTTATAAACTACTAATTTTAAATATAATAAATTTATAAATAATTTTTACAAAGAATATCAAA
TATAATTTCTGTTCTATCAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQKIAHTKQEMITAARKLIQAKGVASTGLMEIVAAAETSRGSIYHHFPGGKDELICLAIEEAAILAELGILRAGKKGKNA
AEVIQKIASLFRQVPENSKWQVGCPVAATAIEGHSQSKIVRDAVANAFSRWSKAIEFTLSEAGLKPEDAKSIGIGIVAAL
EGGLLLARGLSSSKPYDTIIDLIIAGVATKDKNPPKNKQS

Sequences:

>Translated_200_residues
MQKIAHTKQEMITAARKLIQAKGVASTGLMEIVAAAETSRGSIYHHFPGGKDELICLAIEEAAILAELGILRAGKKGKNA
AEVIQKIASLFRQVPENSKWQVGCPVAATAIEGHSQSKIVRDAVANAFSRWSKAIEFTLSEAGLKPEDAKSIGIGIVAAL
EGGLLLARGLSSSKPYDTIIDLIIAGVATKDKNPPKNKQS
>Mature_200_residues
MQKIAHTKQEMITAARKLIQAKGVASTGLMEIVAAAETSRGSIYHHFPGGKDELICLAIEEAAILAELGILRAGKKGKNA
AEVIQKIASLFRQVPENSKWQVGCPVAATAIEGHSQSKIVRDAVANAFSRWSKAIEFTLSEAGLKPEDAKSIGIGIVAAL
EGGLLLARGLSSSKPYDTIIDLIIAGVATKDKNPPKNKQS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21152; Mature: 21152

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIAHTKQEMITAARKLIQAKGVASTGLMEIVAAAETSRGSIYHHFPGGKDELICLAIE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEHH
EAAILAELGILRAGKKGKNAAEVIQKIASLFRQVPENSKWQVGCPVAATAIEGHSQSKIV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCHHHHH
RDAVANAFSRWSKAIEFTLSEAGLKPEDAKSIGIGIVAALEGGLLLARGLSSSKPYDTII
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHH
DLIIAGVATKDKNPPKNKQS
HHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQKIAHTKQEMITAARKLIQAKGVASTGLMEIVAAAETSRGSIYHHFPGGKDELICLAIE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEHH
EAAILAELGILRAGKKGKNAAEVIQKIASLFRQVPENSKWQVGCPVAATAIEGHSQSKIV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCCCHHHHH
RDAVANAFSRWSKAIEFTLSEAGLKPEDAKSIGIGIVAALEGGLLLARGLSSSKPYDTII
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHH
DLIIAGVATKDKNPPKNKQS
HHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]