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The map label for this gene is cph2 [H]

Identifier: 45657180

GI number: 45657180

Start: 1607602

End: 1608831

Strand: Reverse

Name: cph2 [H]

Synonym: LIC11300

Alternate gene names: 45657180

Gene position: 1608831-1607602 (Counterclockwise)

Preceding gene: 45657181

Following gene: 45657174

Centisome position: 37.61

GC content: 35.53

Gene sequence:

>1230_bases
ATGAGGCTTTCTTTGGGAAATAATCAAAAAATAAAACTACTCGCTAGGAGAGTTTTTTTTAATCCGTTTCCGGATGATTA
TTTGAGAATTTATCAACCAGATGTTAGAAGAGCCACAGTTATCTATTTCTTTTTTTGTATCGGAATTAGTTTTCTTTCCT
TTCTACTTCCGGACGGGGCTTCTTTACTCGGGAAAGAAAACCAAATTCTAGTATATTCCCGTTTAACCGTCTTACTTTTA
TCTGCTTTCTTCGCATTTCTGCTTATAAAATGGAGACCTTTTTTTAGAAGAAGGATAGAAAGATACAGTATTTTATCCTC
AGGAGTAATCGTGTTCTCTATTCTCCCTTATGTTTTTTTAGATCCAGGAAGAATGGGACTCTACTTTCATTTTTATACAA
CTTTAGTTGTAAGTGGAAATATTCTTCTTTGGCTCACCGGAACAACCGTAGTCATTTTCAATGGACTTTTTTATTTTTCT
CTAGTTTTATGTACATCTCTGACCGGAAACAAAAACGTACTTCAACACGATTTTGCAAACGTACTCATCTATCTTTTTAC
TGGAATTTTTGGAAACCTTCTGATTAATTTTTGGAGGGTGATGGATCACAGAGCCAAAAAAAAACTTCAAAAAGCTGTAA
GTAAACTCAGAGATAAAAACATTCAAATTGAAAAAATTTCCAAGGTGGATGAACTCACTGGTCTCTACAATCGAAGATAT
TTGATCGAACAATTTGAATTATTTCTTAAAAGAGCACAACGTTATCGTTTTTCTCTCGCTATGATCATCTTAGATATGGA
TTATCTAAAAGAAATCAACGATTCTTACGGACATTTGGCCGGAGATTTATCTCTTCGTACAATTTCAGACGTGATGAAAC
AAAGAGTCAGAGCGACCGATATCTGCTCTCGAATCGGCGGGGATGAATTTTGTATTCTTTTAGATGCGATCAAAAAAGAA
GATCTGGTTCAACTTTGCGAAAACTTAAGAATGGAAGTCGCCGAAAAAGAATTATCCTACCGAACCCAAAAAGGAAGTCC
GGTTAAAATTACAGTTTCCATCGGTGCTTGTATCTTTGGTCCCGGAGAAGAATTCAGTTTTGACGACATCTATCATTCCA
TAGACTCAGCTCTTTATGAATCTAAAAAAAAGGGAAGAAACAGAGTTTCTTTTATAGAACCGATCCGTTACTTTCCCAGA
GAATATCCGGGAACTACTGCTGCTTCTTAG

Upstream 100 bases:

>100_bases
AGTAACAACAAACAAACCGGCAGGATTATAAATCCTGATTGTTTATACAAAACCATTTTTAAAATGAGGAAGTTAGATCG
TCCGATCTTTTGTAAAACAG

Downstream 100 bases:

>100_bases
GCGCAGGAAGTTCATAGTGATACGTAATTTCACAATAAGCCCCGTCGTCTATATATTTCGTGTCCACGGTTTCCATAAAA
AATAATCTGTTTTTTTGTTC

Product: GGDEF family protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRLSLGNNQKIKLLARRVFFNPFPDDYLRIYQPDVRRATVIYFFFCIGISFLSFLLPDGASLLGKENQILVYSRLTVLLL
SAFFAFLLIKWRPFFRRRIERYSILSSGVIVFSILPYVFLDPGRMGLYFHFYTTLVVSGNILLWLTGTTVVIFNGLFYFS
LVLCTSLTGNKNVLQHDFANVLIYLFTGIFGNLLINFWRVMDHRAKKKLQKAVSKLRDKNIQIEKISKVDELTGLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLSLRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKE
DLVQLCENLRMEVAEKELSYRTQKGSPVKITVSIGACIFGPGEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPIRYFPR
EYPGTTAAS

Sequences:

>Translated_409_residues
MRLSLGNNQKIKLLARRVFFNPFPDDYLRIYQPDVRRATVIYFFFCIGISFLSFLLPDGASLLGKENQILVYSRLTVLLL
SAFFAFLLIKWRPFFRRRIERYSILSSGVIVFSILPYVFLDPGRMGLYFHFYTTLVVSGNILLWLTGTTVVIFNGLFYFS
LVLCTSLTGNKNVLQHDFANVLIYLFTGIFGNLLINFWRVMDHRAKKKLQKAVSKLRDKNIQIEKISKVDELTGLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLSLRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKE
DLVQLCENLRMEVAEKELSYRTQKGSPVKITVSIGACIFGPGEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPIRYFPR
EYPGTTAAS
>Mature_409_residues
MRLSLGNNQKIKLLARRVFFNPFPDDYLRIYQPDVRRATVIYFFFCIGISFLSFLLPDGASLLGKENQILVYSRLTVLLL
SAFFAFLLIKWRPFFRRRIERYSILSSGVIVFSILPYVFLDPGRMGLYFHFYTTLVVSGNILLWLTGTTVVIFNGLFYFS
LVLCTSLTGNKNVLQHDFANVLIYLFTGIFGNLLINFWRVMDHRAKKKLQKAVSKLRDKNIQIEKISKVDELTGLYNRRY
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLSLRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKE
DLVQLCENLRMEVAEKELSYRTQKGSPVKITVSIGACIFGPGEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPIRYFPR
EYPGTTAAS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=33.7349397590361, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082007, Length=241, Percent_Identity=29.045643153527, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI145693134, Length=222, Percent_Identity=32.8828828828829, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=35.2941176470588, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=27.3743016759777, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=34.8837209302326, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=34.4827586206897, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=30.7228915662651, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.9285714285714, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=246, Percent_Identity=23.9837398373984, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=190, Percent_Identity=25.2631578947368, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 47422; Mature: 47422

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSLGNNQKIKLLARRVFFNPFPDDYLRIYQPDVRRATVIYFFFCIGISFLSFLLPDGA
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
SLLGKENQILVYSRLTVLLLSAFFAFLLIKWRPFFRRRIERYSILSSGVIVFSILPYVFL
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
DPGRMGLYFHFYTTLVVSGNILLWLTGTTVVIFNGLFYFSLVLCTSLTGNKNVLQHDFAN
CCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VLIYLFTGIFGNLLINFWRVMDHRAKKKLQKAVSKLRDKNIQIEKISKVDELTGLYNRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLSLRTISDVMKQRVRATD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCCCHHHHHHHHHHHHHHHHH
ICSRIGGDEFCILLDAIKKEDLVQLCENLRMEVAEKELSYRTQKGSPVKITVSIGACIFG
HHHHCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEEEC
PGEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPIRYFPREYPGTTAAS
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRLSLGNNQKIKLLARRVFFNPFPDDYLRIYQPDVRRATVIYFFFCIGISFLSFLLPDGA
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH
SLLGKENQILVYSRLTVLLLSAFFAFLLIKWRPFFRRRIERYSILSSGVIVFSILPYVFL
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
DPGRMGLYFHFYTTLVVSGNILLWLTGTTVVIFNGLFYFSLVLCTSLTGNKNVLQHDFAN
CCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
VLIYLFTGIFGNLLINFWRVMDHRAKKKLQKAVSKLRDKNIQIEKISKVDELTGLYNRRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGDLSLRTISDVMKQRVRATD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCCCHHHHHHHHHHHHHHHHH
ICSRIGGDEFCILLDAIKKEDLVQLCENLRMEVAEKELSYRTQKGSPVKITVSIGACIFG
HHHHCCCCCEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEEEEC
PGEEFSFDDIYHSIDSALYESKKKGRNRVSFIEPIRYFPREYPGTTAAS
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]