Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 45656948

GI number: 45656948

Start: 1314005

End: 1315021

Strand: Reverse

Name: yebA [C]

Synonym: LIC11064

Alternate gene names: 45656948

Gene position: 1315021-1314005 (Counterclockwise)

Preceding gene: 45656950

Following gene: 45656947

Centisome position: 30.75

GC content: 40.51

Gene sequence:

>1017_bases
ATGATAAGTCCGGCAAAGTATGATCTCAAATTGACCCATTCCGAACGTCTGCAAGTCAAAATTCTCAAATTCAAAAACAG
ATTTCGGAAATTCAAAGAGTCTGGTTCTAAGAAGATCTCTTTTTTACTCGTTCCTCACAGTCATGAAAACGTGATCACCA
TCGAACTTAACGTTTTTATGGCTTGGTTTCTCGGAATTCTTTCGGGACTGATTCTGATCTTAGCGTTCCTCTTTCTCTCT
TATTTGAATTTTTTCTACCGTCCCGATCAAGACTTGTTTCAAAAAAGCGACGAGAACGTCAGTCAATATCTTTACTACGA
TATGCTCCTTCAAGACGCTAAAAAGGAAATTCGTGGTTTAGAAAGAAAAACCGAACAGCTCAATCTAGTCGCTTGGGACG
AGGTTCCTTGGAAACGGATTCTGACATATGAAGTTATCCCAGAATTTCATCTCAAAAAGGAAATTCCGGATTCTGAAACC
AATCTAGAACTTTATAAAAATACGGTAGAAGGTTTTGCGGTTCAGAACATTGAACTATTTCGGATTCGCCAAGCGTTTGA
AAACGCATTCGATTATCTCGAAGAAAGAGAATCTATTTTATACGCTCTTCCTAGAGGTCGTCCACTCAAACCGGGAGTAG
GTTTCGTATCTTCTACGTTTGGTGGTAGAGTGGATCCTTTTGGTTTGGTCATATTAGGAGAACATCACTCCGGAGTTGAT
TTTGCTTCTGCAGAAGGAACTCCTATTTATGCGACCGCTCCCGGAGTGGTTGTAGAGTCTGGCCAATCTTCAGGTGGTTT
AGGTAGGAATATTAAGATCAATCACTTAAATGGTATTTTTACGGTTTACGGACACTGTTCTCAGATTCTAGTAGAAAAAA
ATCAGATCGTCAAACGTGGAGATCTGATCGGTCTAGTTGGCTCGACAGGCAAAGCCACAGGTCCACACGTTCATTACGAG
GTTCATATCGGTCAAGATCCTCCTTTAGATCCGGCCGAATTTATCAATATAGAATAG

Upstream 100 bases:

>100_bases
TCAACTGATCCTATTTTTTTCTTGAACAGATTGGACAGGAATTTCATATAAAGAATGGGTCTATAATCCCTTCGATCCCC
CTACCTGCAAGTAAAAATCT

Downstream 100 bases:

>100_bases
AATCTAGCAACAATCTTTTCAAAGAACTATGTCGTGAGCTCCCACAATTTCAAAATTAGTTTGTAAAATCTCAGTTTGTG
AGAGTTCCCACAATTTCAAA

Product: membrane associated metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MISPAKYDLKLTHSERLQVKILKFKNRFRKFKESGSKKISFLLVPHSHENVITIELNVFMAWFLGILSGLILILAFLFLS
YLNFFYRPDQDLFQKSDENVSQYLYYDMLLQDAKKEIRGLERKTEQLNLVAWDEVPWKRILTYEVIPEFHLKKEIPDSET
NLELYKNTVEGFAVQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVILGEHHSGVD
FASAEGTPIYATAPGVVVESGQSSGGLGRNIKINHLNGIFTVYGHCSQILVEKNQIVKRGDLIGLVGSTGKATGPHVHYE
VHIGQDPPLDPAEFINIE

Sequences:

>Translated_338_residues
MISPAKYDLKLTHSERLQVKILKFKNRFRKFKESGSKKISFLLVPHSHENVITIELNVFMAWFLGILSGLILILAFLFLS
YLNFFYRPDQDLFQKSDENVSQYLYYDMLLQDAKKEIRGLERKTEQLNLVAWDEVPWKRILTYEVIPEFHLKKEIPDSET
NLELYKNTVEGFAVQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVILGEHHSGVD
FASAEGTPIYATAPGVVVESGQSSGGLGRNIKINHLNGIFTVYGHCSQILVEKNQIVKRGDLIGLVGSTGKATGPHVHYE
VHIGQDPPLDPAEFINIE
>Mature_338_residues
MISPAKYDLKLTHSERLQVKILKFKNRFRKFKESGSKKISFLLVPHSHENVITIELNVFMAWFLGILSGLILILAFLFLS
YLNFFYRPDQDLFQKSDENVSQYLYYDMLLQDAKKEIRGLERKTEQLNLVAWDEVPWKRILTYEVIPEFHLKKEIPDSET
NLELYKNTVEGFAVQNIELFRIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVILGEHHSGVD
FASAEGTPIYATAPGVVVESGQSSGGLGRNIKINHLNGIFTVYGHCSQILVEKNQIVKRGDLIGLVGSTGKATGPHVHYE
VHIGQDPPLDPAEFINIE

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=104, Percent_Identity=46.1538461538462, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38388; Mature: 38388

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPAKYDLKLTHSERLQVKILKFKNRFRKFKESGSKKISFLLVPHSHENVITIELNVFM
CCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHHHH
AWFLGILSGLILILAFLFLSYLNFFYRPDQDLFQKSDENVSQYLYYDMLLQDAKKEIRGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ERKTEQLNLVAWDEVPWKRILTYEVIPEFHLKKEIPDSETNLELYKNTVEGFAVQNIELF
HHHHHHEEEEEECCCCHHHHEEHHHCCCHHHHHCCCCCCCCHHHHHHHHCCEEECCHHHH
RIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVILGEHHSGVD
HHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCC
FASAEGTPIYATAPGVVVESGQSSGGLGRNIKINHLNGIFTVYGHCSQILVEKNQIVKRG
CCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHCC
DLIGLVGSTGKATGPHVHYEVHIGQDPPLDPAEFINIE
CEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure
MISPAKYDLKLTHSERLQVKILKFKNRFRKFKESGSKKISFLLVPHSHENVITIELNVFM
CCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHHHH
AWFLGILSGLILILAFLFLSYLNFFYRPDQDLFQKSDENVSQYLYYDMLLQDAKKEIRGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ERKTEQLNLVAWDEVPWKRILTYEVIPEFHLKKEIPDSETNLELYKNTVEGFAVQNIELF
HHHHHHEEEEEECCCCHHHHEEHHHCCCHHHHHCCCCCCCCHHHHHHHHCCEEECCHHHH
RIRQAFENAFDYLEERESILYALPRGRPLKPGVGFVSSTFGGRVDPFGLVILGEHHSGVD
HHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCC
FASAEGTPIYATAPGVVVESGQSSGGLGRNIKINHLNGIFTVYGHCSQILVEKNQIVKRG
CCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHCC
DLIGLVGSTGKATGPHVHYEVHIGQDPPLDPAEFINIE
CEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]