| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is smc
Identifier: 45656612
GI number: 45656612
Start: 862692
End: 865169
Strand: Reverse
Name: smc
Synonym: LIC10714
Alternate gene names: 45656612
Gene position: 865169-862692 (Counterclockwise)
Preceding gene: 45656614
Following gene: 45656611
Centisome position: 20.23
GC content: 38.42
Gene sequence:
>2478_bases TTGAAACTCAAAATGAAACATAGATCCGCTTTGCCTCTTTGTATTTTTCTATTTCTTCTTTTTTCTTGGGAAGTTCCAGC ACAATCAGAAGAAACAAACAAACCAATCCTTTCTGAAACTTCTTCCAACGGAGAAGAAACCGAAAAAGAAAAATGGAATC AAGGAACCATTTCAGTAATAGGAAAACGAAAAACAGACCTTAAAAGAATTCCTGGGTCTGCCACAGTCATTGAAAAGGAA TTTTTGGAACAGACCAAACCTGTAGACTCAATGGAGGTTTTAAGAAGAATTCCAGGCGCCTCAATCCGTTACCAAGATAC TGGTTTAATTTTAAACCTTGGATTTAGAGGAGTAAATAACGACCTCGGAAGAAAAGTACTCATTTTAGAAGATGGAGTTT TCACTTCTCTGAACCCCTACTCCGCACCAGAACAATACTACACACCTAACATAGATCGTATGGAGAGAATAGAAGTAGTC AAAGGTTCAGGGGCAATTCTTTTTGGGCCTTCTACAATCGGAGGAGTAGTAAACTTCATCACAAAACGTCCACCCAAAGA TCCTATGCTTTCCGTTTCCGTTCAAGGAGGATCTTACGGTTTTTTTTCTTCTCAAGTTTCTTACGGCGGAACTTTCGGAA ATACAGGAATCGACATTTCAATTCTTAGAAAACAAGGAGATGGATTTAGAGAACATCAAAGTTTTCGAATTCACGAATTT TCATTTAAGTCCGTCACCGATTTAAACGACAAACATACTCTTACTTCTAAATTTCTTGCAACCGCACAAGACGCAAATAT GACTTATTTAGGTCTTACCACGGCTCAATTTTGGAACCATTCTTCTTCTAATTTTGCGGAACAGGATAACCGAAAATTAG AAAGATACTCGGGTGATATAGGTCACGAATGGAAACTTACAGATCATTCTAAACTCGTAACCAAAGTTTACTCCGCTTAT ACAGAAAGAAATTGGGCAAGACAAAATTACCTTAGAAACACAGGTTCCAACTTTAATACAATTCCGTCTAACGTAATTAA ATCGTACGATACAGAACCTTTTGTAAATCGTCCAGGTGATACGGTTTATATGTTAGATAGTGTGGGTCATAGAAATCGTT CTTATCGTTTTGTAGGAGCGGAATCTCGCTATCAACAAGACTATCAATTTTTAGGAATTAAAAACCAACTAGATGCTGGA CTTCGTTATCACTACGAAACCGCAGACATCAAATATCTGGACGGGCCACCTACTCCCGATTATGCGATCTTTGGTAACGG TTTTAACAATCCACCTACCGGAGTTGCTTCCTCTGAATATTCTCTTGCAAAATCAGGAAACGTAAGAGATCACGAAGTCA ATAATACCAAGTCACTTGCAGGTTTTGCTCAGAACAGTTTTCAATTCCAGAATAGGTTTTCCGTAATTCCAGGAATTCGT TACGAAATGTTTACACAAAATAGAACGATCCTCCGTCAACAAACCATTGACCCAGTGACCAATCAACCAGATCCAAACTC TCCTTCTCAAGAAGTGGACAAAGGAAGTAAACATACCTATCACGTAGTAATTCCAGGACTTGGTCTTACATACGATATTC GTAAAAACGCAAACTGGTTCAAAGATTTGACTTGGTTTGCAGGAGCTCACAAAGGTTTTTCTCCACCTAGATACCAAGAC GCATTGAATAATTCAGGAATCGTAAATCGAATCGACCCGGAATATTCCTATAATTACGAAACCGGTTTTAGAGGAGATAT TACAAAATACTTAAATGCTCAGATTACTTACTTTAACCTAAACTATATCAATCAGATCATCATCACTTCTTCTACTTCCG GTAACGATTCCGCTTCTTCAGCTAAAAACGGTGGCAGAACTTACAGTAGAGGTGTGGAAACTAACGTTACTTTCGATCCG GCCCAATTGTTCGACTCTTCTTTTAAACTTCCAATCGATCTGATTTACACAAGAGCAGACGCGAGAATGAACCAGTATTC CATAGACACTTCTAAAATTACAGCGGATCAATCTCTTCTCGATTTTGTAGTTACTCAAAAAGATAAAAACGGAAATTACG TTCCGTATGTCTCTAAAGACACTGCAACTTTAGCAATTGGTTTTATTCATCCAAAAGGTTTTTATGCAAGAGTAGAATAT CAATATTTTTCCTCCCAGTATCATGACGACTCAAATACCAGAACCGTTTATTGGGCAGATTCCATCACCGATCCTCTTGG TAAAAAAGTATTACAATATTTGAATATTACTTCTAATAGTTCCGGCGAAACCGGCGTAATCCCCGCATACGAACTGATCA ATTGTTCCTTAGGATACAAGGATCCTATCAAACGTTGGAGCCTTTTTATAACAGGTAAAAACTTGGCGGACGTTCGTTAC ATTTCAGGTCGTCTTCCGGAAGGAATTCAAGTCGGTCCATTCCGCCAAATCAACGTAGGTGCCACGTTTGAACTTTAA
Upstream 100 bases:
>100_bases ATCTGATTTTTTAGAATTTTTCTCTCAAAAAGAAACAATTTCAAATCATTCTCCCTTGACTCTAAAGACCACCAACAAAT ATTGAGAATCATTTTCAAAA
Downstream 100 bases:
>100_bases TCTTTGTTTTAATAGATTCCGTCTTTTAAAATTTAGAAAATCAAACTTTTAGTTTTGTGAATTGTTTTAGGCACACGTTA TGCGTATTTTTGATGATTTA
Product: outer membrane receptor protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MKLKMKHRSALPLCIFLFLLFSWEVPAQSEETNKPILSETSSNGEETEKEKWNQGTISVIGKRKTDLKRIPGSATVIEKE FLEQTKPVDSMEVLRRIPGASIRYQDTGLILNLGFRGVNNDLGRKVLILEDGVFTSLNPYSAPEQYYTPNIDRMERIEVV KGSGAILFGPSTIGGVVNFITKRPPKDPMLSVSVQGGSYGFFSSQVSYGGTFGNTGIDISILRKQGDGFREHQSFRIHEF SFKSVTDLNDKHTLTSKFLATAQDANMTYLGLTTAQFWNHSSSNFAEQDNRKLERYSGDIGHEWKLTDHSKLVTKVYSAY TERNWARQNYLRNTGSNFNTIPSNVIKSYDTEPFVNRPGDTVYMLDSVGHRNRSYRFVGAESRYQQDYQFLGIKNQLDAG LRYHYETADIKYLDGPPTPDYAIFGNGFNNPPTGVASSEYSLAKSGNVRDHEVNNTKSLAGFAQNSFQFQNRFSVIPGIR YEMFTQNRTILRQQTIDPVTNQPDPNSPSQEVDKGSKHTYHVVIPGLGLTYDIRKNANWFKDLTWFAGAHKGFSPPRYQD ALNNSGIVNRIDPEYSYNYETGFRGDITKYLNAQITYFNLNYINQIIITSSTSGNDSASSAKNGGRTYSRGVETNVTFDP AQLFDSSFKLPIDLIYTRADARMNQYSIDTSKITADQSLLDFVVTQKDKNGNYVPYVSKDTATLAIGFIHPKGFYARVEY QYFSSQYHDDSNTRTVYWADSITDPLGKKVLQYLNITSNSSGETGVIPAYELINCSLGYKDPIKRWSLFITGKNLADVRY ISGRLPEGIQVGPFRQINVGATFEL
Sequences:
>Translated_825_residues MKLKMKHRSALPLCIFLFLLFSWEVPAQSEETNKPILSETSSNGEETEKEKWNQGTISVIGKRKTDLKRIPGSATVIEKE FLEQTKPVDSMEVLRRIPGASIRYQDTGLILNLGFRGVNNDLGRKVLILEDGVFTSLNPYSAPEQYYTPNIDRMERIEVV KGSGAILFGPSTIGGVVNFITKRPPKDPMLSVSVQGGSYGFFSSQVSYGGTFGNTGIDISILRKQGDGFREHQSFRIHEF SFKSVTDLNDKHTLTSKFLATAQDANMTYLGLTTAQFWNHSSSNFAEQDNRKLERYSGDIGHEWKLTDHSKLVTKVYSAY TERNWARQNYLRNTGSNFNTIPSNVIKSYDTEPFVNRPGDTVYMLDSVGHRNRSYRFVGAESRYQQDYQFLGIKNQLDAG LRYHYETADIKYLDGPPTPDYAIFGNGFNNPPTGVASSEYSLAKSGNVRDHEVNNTKSLAGFAQNSFQFQNRFSVIPGIR YEMFTQNRTILRQQTIDPVTNQPDPNSPSQEVDKGSKHTYHVVIPGLGLTYDIRKNANWFKDLTWFAGAHKGFSPPRYQD ALNNSGIVNRIDPEYSYNYETGFRGDITKYLNAQITYFNLNYINQIIITSSTSGNDSASSAKNGGRTYSRGVETNVTFDP AQLFDSSFKLPIDLIYTRADARMNQYSIDTSKITADQSLLDFVVTQKDKNGNYVPYVSKDTATLAIGFIHPKGFYARVEY QYFSSQYHDDSNTRTVYWADSITDPLGKKVLQYLNITSNSSGETGVIPAYELINCSLGYKDPIKRWSLFITGKNLADVRY ISGRLPEGIQVGPFRQINVGATFEL >Mature_825_residues MKLKMKHRSALPLCIFLFLLFSWEVPAQSEETNKPILSETSSNGEETEKEKWNQGTISVIGKRKTDLKRIPGSATVIEKE FLEQTKPVDSMEVLRRIPGASIRYQDTGLILNLGFRGVNNDLGRKVLILEDGVFTSLNPYSAPEQYYTPNIDRMERIEVV KGSGAILFGPSTIGGVVNFITKRPPKDPMLSVSVQGGSYGFFSSQVSYGGTFGNTGIDISILRKQGDGFREHQSFRIHEF SFKSVTDLNDKHTLTSKFLATAQDANMTYLGLTTAQFWNHSSSNFAEQDNRKLERYSGDIGHEWKLTDHSKLVTKVYSAY TERNWARQNYLRNTGSNFNTIPSNVIKSYDTEPFVNRPGDTVYMLDSVGHRNRSYRFVGAESRYQQDYQFLGIKNQLDAG LRYHYETADIKYLDGPPTPDYAIFGNGFNNPPTGVASSEYSLAKSGNVRDHEVNNTKSLAGFAQNSFQFQNRFSVIPGIR YEMFTQNRTILRQQTIDPVTNQPDPNSPSQEVDKGSKHTYHVVIPGLGLTYDIRKNANWFKDLTWFAGAHKGFSPPRYQD ALNNSGIVNRIDPEYSYNYETGFRGDITKYLNAQITYFNLNYINQIIITSSTSGNDSASSAKNGGRTYSRGVETNVTFDP AQLFDSSFKLPIDLIYTRADARMNQYSIDTSKITADQSLLDFVVTQKDKNGNYVPYVSKDTATLAIGFIHPKGFYARVEY QYFSSQYHDDSNTRTVYWADSITDPLGKKVLQYLNITSNSSGETGVIPAYELINCSLGYKDPIKRWSLFITGKNLADVRY ISGRLPEGIQVGPFRQINVGATFEL
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=757, Percent_Identity=23.5138705416116, Blast_Score=124, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93041; Mature: 93041
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKMKHRSALPLCIFLFLLFSWEVPAQSEETNKPILSETSSNGEETEKEKWNQGTISVI CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE GKRKTDLKRIPGSATVIEKEFLEQTKPVDSMEVLRRIPGASIRYQDTGLILNLGFRGVNN ECCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCEEEEECCCCCCC DLGRKVLILEDGVFTSLNPYSAPEQYYTPNIDRMERIEVVKGSGAILFGPSTIGGVVNFI CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCHHHEEEEEECCCEEEECCHHHHHHHHHH TKRPPKDPMLSVSVQGGSYGFFSSQVSYGGTFGNTGIDISILRKQGDGFREHQSFRIHEF HCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCHHCCCEEEEEE SFKSVTDLNDKHTLTSKFLATAQDANMTYLGLTTAQFWNHSSSNFAEQDNRKLERYSGDI CCCHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHCCCC GHEWKLTDHSKLVTKVYSAYTERNWARQNYLRNTGSNFNTIPSNVIKSYDTEPFVNRPGD CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCC TVYMLDSVGHRNRSYRFVGAESRYQQDYQFLGIKNQLDAGLRYHYETADIKYLDGPPTPD EEEEECCCCCCCCCEEEECCCHHHHCCCEEECCCHHHCCCCEEEEECCCEEEECCCCCCC YAIFGNGFNNPPTGVASSEYSLAKSGNVRDHEVNNTKSLAGFAQNSFQFQNRFSVIPGIR EEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCHHHCCCEECCCCCE YEMFTQNRTILRQQTIDPVTNQPDPNSPSQEVDKGSKHTYHVVIPGLGLTYDIRKNANWF EEEECCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCEEEEECCCCCHH KDLTWFAGAHKGFSPPRYQDALNNSGIVNRIDPEYSYNYETGFRGDITKYLNAQITYFNL HHHHHHHCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCEEEEEEC NYINQIIITSSTSGNDSASSAKNGGRTYSRGVETNVTFDPAQLFDSSFKLPIDLIYTRAD CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCEEECHHHHHCCCCCCCEEEEEEECC ARMNQYSIDTSKITADQSLLDFVVTQKDKNGNYVPYVSKDTATLAIGFIHPKGFYARVEY CCCCEEECCHHHCCCHHHHHHHHHEEECCCCCCCCEECCCCEEEEEEEECCCCEEEEEEE QYFSSQYHDDSNTRTVYWADSITDPLGKKVLQYLNITSNSSGETGVIPAYELINCSLGYK EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCC DPIKRWSLFITGKNLADVRYISGRLPEGIQVGPFRQINVGATFEL CCCCEEEEEEECCCCCEEHEECCCCCCCCEECCEEEECCCEEECC >Mature Secondary Structure MKLKMKHRSALPLCIFLFLLFSWEVPAQSEETNKPILSETSSNGEETEKEKWNQGTISVI CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEE GKRKTDLKRIPGSATVIEKEFLEQTKPVDSMEVLRRIPGASIRYQDTGLILNLGFRGVNN ECCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECCCEEEEECCCCCCC DLGRKVLILEDGVFTSLNPYSAPEQYYTPNIDRMERIEVVKGSGAILFGPSTIGGVVNFI CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCHHHEEEEEECCCEEEECCHHHHHHHHHH TKRPPKDPMLSVSVQGGSYGFFSSQVSYGGTFGNTGIDISILRKQGDGFREHQSFRIHEF HCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCHHCCCEEEEEE SFKSVTDLNDKHTLTSKFLATAQDANMTYLGLTTAQFWNHSSSNFAEQDNRKLERYSGDI CCCHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHCCCC GHEWKLTDHSKLVTKVYSAYTERNWARQNYLRNTGSNFNTIPSNVIKSYDTEPFVNRPGD CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCC TVYMLDSVGHRNRSYRFVGAESRYQQDYQFLGIKNQLDAGLRYHYETADIKYLDGPPTPD EEEEECCCCCCCCCEEEECCCHHHHCCCEEECCCHHHCCCCEEEEECCCEEEECCCCCCC YAIFGNGFNNPPTGVASSEYSLAKSGNVRDHEVNNTKSLAGFAQNSFQFQNRFSVIPGIR EEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCHHHCCCEECCCCCE YEMFTQNRTILRQQTIDPVTNQPDPNSPSQEVDKGSKHTYHVVIPGLGLTYDIRKNANWF EEEECCCCHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCEEEEECCCCCHH KDLTWFAGAHKGFSPPRYQDALNNSGIVNRIDPEYSYNYETGFRGDITKYLNAQITYFNL HHHHHHHCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHHCCCEEEEEEC NYINQIIITSSTSGNDSASSAKNGGRTYSRGVETNVTFDPAQLFDSSFKLPIDLIYTRAD CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCEEECHHHHHCCCCCCCEEEEEEECC ARMNQYSIDTSKITADQSLLDFVVTQKDKNGNYVPYVSKDTATLAIGFIHPKGFYARVEY CCCCEEECCHHHCCCHHHHHHHHHEEECCCCCCCCEECCCCEEEEEEEECCCCEEEEEEE QYFSSQYHDDSNTRTVYWADSITDPLGKKVLQYLNITSNSSGETGVIPAYELINCSLGYK EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCCCC DPIKRWSLFITGKNLADVRYISGRLPEGIQVGPFRQINVGATFEL CCCCEEEEEEECCCCCEEHEECCCCCCCCEECCEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]