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The map label for this gene is senC

Identifier: 45656461

GI number: 45656461

Start: 689171

End: 689947

Strand: Direct

Name: senC

Synonym: LIC10563

Alternate gene names: 45656461

Gene position: 689171-689947 (Clockwise)

Preceding gene: 45656460

Following gene: 45656462

Centisome position: 16.11

GC content: 28.57

Gene sequence:

>777_bases
TTGTGGCAGATTCTTAATAAAAAAAGTTGGTTTGAAATAATGAATTTAATATATAAATTATTTATAAAATTAATATATTC
TTTTTTTATTATATTTTTTGTTGTTTTTTGTGAAGATATAAAAGAAAAATACCATCCTGAATTAACTTATTTTTCTTTTC
CTAAGGAAGGAATTCTTCCTTACTTTAAAGGTGAAGTAATGGATCCTTATTGGCAGGAGGCGGACAAAAAATTGCCGGAT
GATCTTAGAAAGGTTCCGGAGTTTACTCTTCTTACCCATGAAAACCTTGCATTTAACAATCAAAATTTGAGAGATAAGTA
TACGTTAGTCGTATTTTTCTATGCGAAGTGTAAGGGTATTTGTCCCATGATTACCAGAAATATGTTGAATTTTATCCCTA
AGATAAAAGACCAAACTGATCTTCAGATTGTTTCGATTACTGTAAATCCTGAGACTGATTCGGTGGAAGTTCTTAAAAAA
TTTAGAAATCAATATAAAATTGTTCAGAATAATTGGGTTTTTCTCACGGGTTCTAAAAAAACGATTTATGATTTAGCAAG
AAATCAATTCGGCGCGGATATAAAGTTGATTTCTGGAAAGGATAATTTAAACGATTTTGTTCATACGGAGAACGTATATT
TGATCGATAAAAAAAATTATTTACGAGGAATATATAGAGCCAAAGGTTCTGGAGATTTGGAAAGATTGAAAATAGAATTG
AATACTTTAAAAGAAGAAGATAAAAAATCTGCGATTACTTCATTTAACATAGATTAA

Upstream 100 bases:

>100_bases
ATGTTGACACTCTATTCTATAATTCTGAGTAAAACGCATTTCTGTTTAAACTCAGTAAAACTTTCTCTATGGATCGTTCT
AAGTAACTTAGTGCATTGCT

Downstream 100 bases:

>100_bases
CGTAAGAGATTCATTTTATAAAATTTGATTTTTCTGTAAAAATAAAATGTGGGAACTAACACAAGTTTAGGTTCTACACT
TAGATTTTGAAAATGTAAGA

Product: SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MWQILNKKSWFEIMNLIYKLFIKLIYSFFIIFFVVFCEDIKEKYHPELTYFSFPKEGILPYFKGEVMDPYWQEADKKLPD
DLRKVPEFTLLTHENLAFNNQNLRDKYTLVVFFYAKCKGICPMITRNMLNFIPKIKDQTDLQIVSITVNPETDSVEVLKK
FRNQYKIVQNNWVFLTGSKKTIYDLARNQFGADIKLISGKDNLNDFVHTENVYLIDKKNYLRGIYRAKGSGDLERLKIEL
NTLKEEDKKSAITSFNID

Sequences:

>Translated_258_residues
MWQILNKKSWFEIMNLIYKLFIKLIYSFFIIFFVVFCEDIKEKYHPELTYFSFPKEGILPYFKGEVMDPYWQEADKKLPD
DLRKVPEFTLLTHENLAFNNQNLRDKYTLVVFFYAKCKGICPMITRNMLNFIPKIKDQTDLQIVSITVNPETDSVEVLKK
FRNQYKIVQNNWVFLTGSKKTIYDLARNQFGADIKLISGKDNLNDFVHTENVYLIDKKNYLRGIYRAKGSGDLERLKIEL
NTLKEEDKKSAITSFNID
>Mature_258_residues
MWQILNKKSWFEIMNLIYKLFIKLIYSFFIIFFVVFCEDIKEKYHPELTYFSFPKEGILPYFKGEVMDPYWQEADKKLPD
DLRKVPEFTLLTHENLAFNNQNLRDKYTLVVFFYAKCKGICPMITRNMLNFIPKIKDQTDLQIVSITVNPETDSVEVLKK
FRNQYKIVQNNWVFLTGSKKTIYDLARNQFGADIKLISGKDNLNDFVHTENVYLIDKKNYLRGIYRAKGSGDLERLKIEL
NTLKEEDKKSAITSFNID

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 30631; Mature: 30631

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQILNKKSWFEIMNLIYKLFIKLIYSFFIIFFVVFCEDIKEKYHPELTYFSFPKEGILP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
YFKGEVMDPYWQEADKKLPDDLRKVPEFTLLTHENLAFNNQNLRDKYTLVVFFYAKCKGI
CCCCCCCCHHHHHHHHCCCHHHHHCCCEEEEEECCCEECCCCCCCCEEEEEEEEHHHCCC
CPMITRNMLNFIPKIKDQTDLQIVSITVNPETDSVEVLKKFRNQYKIVQNNWVFLTGSKK
CHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHEEEECCEEEEECCCH
TIYDLARNQFGADIKLISGKDNLNDFVHTENVYLIDKKNYLRGIYRAKGSGDLERLKIEL
HHHHHHHHCCCCCEEEECCCCCCCHHEECCCEEEEECHHHHHHHHHCCCCCCHHHEEEHH
NTLKEEDKKSAITSFNID
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MWQILNKKSWFEIMNLIYKLFIKLIYSFFIIFFVVFCEDIKEKYHPELTYFSFPKEGILP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
YFKGEVMDPYWQEADKKLPDDLRKVPEFTLLTHENLAFNNQNLRDKYTLVVFFYAKCKGI
CCCCCCCCHHHHHHHHCCCHHHHHCCCEEEEEECCCEECCCCCCCCEEEEEEEEHHHCCC
CPMITRNMLNFIPKIKDQTDLQIVSITVNPETDSVEVLKKFRNQYKIVQNNWVFLTGSKK
CHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHEEEECCEEEEECCCH
TIYDLARNQFGADIKLISGKDNLNDFVHTENVYLIDKKNYLRGIYRAKGSGDLERLKIEL
HHHHHHHHCCCCCEEEECCCCCCCHHEECCCEEEEECHHHHHHHHHCCCCCCHHHEEEHH
NTLKEEDKKSAITSFNID
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]