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The map label for this gene is ssb

Identifier: 45656462

GI number: 45656462

Start: 690659

End: 691012

Strand: Direct

Name: ssb

Synonym: LIC10564

Alternate gene names: 45656462

Gene position: 690659-691012 (Clockwise)

Preceding gene: 45656461

Following gene: 45656463

Centisome position: 16.15

GC content: 40.4

Gene sequence:

>354_bases
ATGAAAAACATAGCACATATCATTTTGGATGGGAATCTTACTTCCGATCCGGAAATCAAAACCTTGAATAGCGGAAAGAG
TGTTGCTACATTTACTCTGGCGGTGAACCACGATTATAAATCTACTTTGGAAGAACCGGGAGAAGTTTCTTTTGTAGAAA
TCGAATTGTGGGATCGTCAGGCCGTAAATGCGCACGAGTATCTCAAAAAAGGAAAAAAAGCAACCGTTATTGGTGAACTT
CGCCAAGATCGTTGGAAGGCACAAGACGGTAGTAATAGAAGTAAATTGAAAGTAGTCGGACAAATGATTCGATTTGATGG
TCTACCTGGAAAGAAAGAGCGAGAAGTGGCTTAA

Upstream 100 bases:

>100_bases
TTTCTCAAAAAAAATTTAAGATTTATGCTCCATTCAATTCTTGTTATGAACTGTTGTTTATAGGGAAGAACAAATTTTCC
TCACAATAGGAGTATCAAGA

Downstream 100 bases:

>100_bases
ATTTTTAAAGGGAGAATTAAAAAAATTCTCCCTTTAAAGCTTGCCTAAAACTTTAAAGCCATGGGAACTTTTGCAATTTT
TAACCTATTGAAAAAATTTA

Product: single-strand DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MKNIAHIILDGNLTSDPEIKTLNSGKSVATFTLAVNHDYKSTLEEPGEVSFVEIELWDRQAVNAHEYLKKGKKATVIGEL
RQDRWKAQDGSNRSKLKVVGQMIRFDGLPGKKEREVA

Sequences:

>Translated_117_residues
MKNIAHIILDGNLTSDPEIKTLNSGKSVATFTLAVNHDYKSTLEEPGEVSFVEIELWDRQAVNAHEYLKKGKKATVIGEL
RQDRWKAQDGSNRSKLKVVGQMIRFDGLPGKKEREVA
>Mature_117_residues
MKNIAHIILDGNLTSDPEIKTLNSGKSVATFTLAVNHDYKSTLEEPGEVSFVEIELWDRQAVNAHEYLKKGKKATVIGEL
RQDRWKAQDGSNRSKLKVVGQMIRFDGLPGKKEREVA

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Escherichia coli, GI1790494, Length=100, Percent_Identity=34, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB_LEPIC (Q72UU3)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_000548.1
- ProteinModelPortal:   Q72UU3
- SMR:   Q72UU3
- GeneID:   2772446
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC10564
- HOGENOM:   HBG755544
- OMA:   MARNTNT
- ProtClustDB:   CLSK574932
- BioCyc:   LINT267671:LIC_10564-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 13135; Mature: 13135

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIAHIILDGNLTSDPEIKTLNSGKSVATFTLAVNHDYKSTLEEPGEVSFVEIELWDRQ
CCCEEEEEEECCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCC
AVNAHEYLKKGKKATVIGELRQDRWKAQDGSNRSKLKVVGQMIRFDGLPGKKEREVA
CCCHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKNIAHIILDGNLTSDPEIKTLNSGKSVATFTLAVNHDYKSTLEEPGEVSFVEIELWDRQ
CCCEEEEEEECCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCC
AVNAHEYLKKGKKATVIGELRQDRWKAQDGSNRSKLKVVGQMIRFDGLPGKKEREVA
CCCHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA