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The map label for this gene is 45656247

Identifier: 45656247

GI number: 45656247

Start: 389169

End: 389771

Strand: Direct

Name: 45656247

Synonym: LIC10343

Alternate gene names: NA

Gene position: 389169-389771 (Clockwise)

Preceding gene: 45656239

Following gene: 45656248

Centisome position: 9.1

GC content: 32.5

Gene sequence:

>603_bases
TTGAAACAGGAGAGATCTTTATTTATGAATCTGAGAAAAACGAATCCGGAAAATGAAGAATATAAAAATATACTTACAGA
TTTAGAAATAAGAAGTTTGATAAATGCAAGCAGAGATAAACCTGATCATTTTGTTCGGATTCGATTTCTGATCATGTTTG
GACTAAAACCGGAAGAACTGATTTCTATACGTTGTGGAGATGTTGATTTAGAAAATCAATTATTGATGGTTCGAGGAGAT
CGAGGGAGAAAAGATAGACATCTAAAGATTTCTCCTTTTTTACTTGGAGATTTTTACGGAACGGTTCGACATAAAAATCC
AGAAGAATATCTATTTCCTGGAAGAAATGGAAAGTTGCATCCTAAAACGATTCAAAAATTTTTCGAAAAATTAGAACATA
AAACTGGGATTCAAGTGAGTTGTTCTAAAATTCGAGAGACAATTGCAGTTCGATTGAGTTCTCGAGGGTTTTCAATTCAA
TTTATTGCGGACTTTCTTGGGTTAAAAACAAGACGAGCCGTTTACCAATTGATTGGGAAAAAATCGAAGTCGAAAGCGGT
AAAAAAATTTTCTTTAGATGAAATTCTGGATATTGAAACTTAA

Upstream 100 bases:

>100_bases
CTTCTATAAATAGCCCTTTTATCTTATGATAATCAAAAAACGGTGATTTCATTCAGTAATTTGATAAGAAGATTGTTGGG
TTTTATAGAGATTCCTTAAG

Downstream 100 bases:

>100_bases
AAATGAGTTGTAAACGCGTTTCGAAAACTTAAGTTAGTCCTAATACTCCAAAAGGAAGCCATCTTTGGAAATCAAAACGA
AAAAGATCGGTAAACATACT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MKQERSLFMNLRKTNPENEEYKNILTDLEIRSLINASRDKPDHFVRIRFLIMFGLKPEELISIRCGDVDLENQLLMVRGD
RGRKDRHLKISPFLLGDFYGTVRHKNPEEYLFPGRNGKLHPKTIQKFFEKLEHKTGIQVSCSKIRETIAVRLSSRGFSIQ
FIADFLGLKTRRAVYQLIGKKSKSKAVKKFSLDEILDIET

Sequences:

>Translated_200_residues
MKQERSLFMNLRKTNPENEEYKNILTDLEIRSLINASRDKPDHFVRIRFLIMFGLKPEELISIRCGDVDLENQLLMVRGD
RGRKDRHLKISPFLLGDFYGTVRHKNPEEYLFPGRNGKLHPKTIQKFFEKLEHKTGIQVSCSKIRETIAVRLSSRGFSIQ
FIADFLGLKTRRAVYQLIGKKSKSKAVKKFSLDEILDIET
>Mature_200_residues
MKQERSLFMNLRKTNPENEEYKNILTDLEIRSLINASRDKPDHFVRIRFLIMFGLKPEELISIRCGDVDLENQLLMVRGD
RGRKDRHLKISPFLLGDFYGTVRHKNPEEYLFPGRNGKLHPKTIQKFFEKLEHKTGIQVSCSKIRETIAVRLSSRGFSIQ
FIADFLGLKTRRAVYQLIGKKSKSKAVKKFSLDEILDIET

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23369; Mature: 23369

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQERSLFMNLRKTNPENEEYKNILTDLEIRSLINASRDKPDHFVRIRFLIMFGLKPEEL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHE
ISIRCGDVDLENQLLMVRGDRGRKDRHLKISPFLLGDFYGTVRHKNPEEYLFPGRNGKLH
EEEECCCCCCCCCEEEEECCCCCCCCEEEECCEEHHHHHHHHCCCCCHHCCCCCCCCCCC
PKTIQKFFEKLEHKTGIQVSCSKIRETIAVRLSSRGFSIQFIADFLGLKTRRAVYQLIGK
HHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCC
KSKSKAVKKFSLDEILDIET
CCHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MKQERSLFMNLRKTNPENEEYKNILTDLEIRSLINASRDKPDHFVRIRFLIMFGLKPEEL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHE
ISIRCGDVDLENQLLMVRGDRGRKDRHLKISPFLLGDFYGTVRHKNPEEYLFPGRNGKLH
EEEECCCCCCCCCEEEEECCCCCCCCEEEECCEEHHHHHHHHCCCCCHHCCCCCCCCCCC
PKTIQKFFEKLEHKTGIQVSCSKIRETIAVRLSSRGFSIQFIADFLGLKTRRAVYQLIGK
HHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCC
KSKSKAVKKFSLDEILDIET
CCHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]