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The map label for this gene is ydeB [H]

Identifier: 45656119

GI number: 45656119

Start: 243511

End: 244104

Strand: Direct

Name: ydeB [H]

Synonym: LIC10214

Alternate gene names: 45656119

Gene position: 243511-244104 (Clockwise)

Preceding gene: 45656118

Following gene: 45656120

Centisome position: 5.69

GC content: 40.07

Gene sequence:

>594_bases
TTGTGCTATTTTCTAAAACAGAGTTTTAACGGAAGTTATCATACTTACTTGGCTGCCAAAAAGAAAAATTCCGAAATCGA
ACACAAGGTAGGCGACTACGTAGTCTATCCAATCCACGGAGTTGGAGAGATTCTTGAAATCTCCAAAAAGAATATCCTGG
GTAAAAAGAAGGATTGTTACGTTCTCGAAATTCAAGGTAGTAAGATGAAGGTCATGATTCCTGTAGACAAAGCAGAACAG
GTTCGAATTCGCCCTATCATCGATAAAAAAGAGATCAAGAAAGTCATTGCACTCCTCAAGAAAGACGAAGTAGATACGGA
AGAGGACTGGAAGATCCGCTACCAAAATAACCTCAATAAGATCAAATCCGGGTCCATTTATGAGGTCGGAGAAGTTTGTA
GAAATCTATTTCGCAGAGCAAGTGGAAAAGAACTCTCCATCATGGAGAGAAAGCTTTACGAAAGCGCCTATAATCTTGTG
AAAATGGAAGTTGCATTGAGTAAAGGGGTTACGCAAGAAGAAGCGGGAAATCTAGTTTCCGATGTATTAGCGAGCACCCT
CTCTCCTAGTGAAAAAAAGGCAGAAGAAGAGTAA

Upstream 100 bases:

>100_bases
AAAATTCAACCTCTCAATGATCCTTTGTTTCATTCTGCTAAGGTTCGCGCACTGAAACTTTAATAGCCTTTTCGGATAAT
TTTGTTGACTTTCGCCAAAT

Downstream 100 bases:

>100_bases
AGTTCCGCAAAAAACTCAAATACAAATTAAGGATTTGAGTTATGATTCATTTCTACAAAGTACTCACGTCTCTGTTCCTT
TCTGGGATTACATTTGCAGT

Product: CarD transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MCYFLKQSFNGSYHTYLAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQ
VRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLV
KMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEEE

Sequences:

>Translated_197_residues
MCYFLKQSFNGSYHTYLAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQ
VRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLV
KMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEEE
>Mature_197_residues
MCYFLKQSFNGSYHTYLAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCYVLEIQGSKMKVMIPVDKAEQ
VRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNKIKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLV
KMEVALSKGVTQEEAGNLVSDVLASTLSPSEKKAEEE

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 22509; Mature: 22509

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCYFLKQSFNGSYHTYLAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCY
CEEEEECCCCCCEEEEEEECCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEE
VLEIQGSKMKVMIPVDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNK
EEEECCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
IKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVS
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DVLASTLSPSEKKAEEE
HHHHHHCCCCHHCCCCC
>Mature Secondary Structure
MCYFLKQSFNGSYHTYLAAKKKNSEIEHKVGDYVVYPIHGVGEILEISKKNILGKKKDCY
CEEEEECCCCCCEEEEEEECCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEE
VLEIQGSKMKVMIPVDKAEQVRIRPIIDKKEIKKVIALLKKDEVDTEEDWKIRYQNNLNK
EEEECCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
IKSGSIYEVGEVCRNLFRRASGKELSIMERKLYESAYNLVKMEVALSKGVTQEEAGNLVS
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DVLASTLSPSEKKAEEE
HHHHHHCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]