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The map label for this gene is 45656112

Identifier: 45656112

GI number: 45656112

Start: 236204

End: 237043

Strand: Direct

Name: 45656112

Synonym: LIC10207

Alternate gene names: NA

Gene position: 236204-237043 (Clockwise)

Preceding gene: 45656111

Following gene: 45656113

Centisome position: 5.52

GC content: 37.38

Gene sequence:

>840_bases
TTGGCTTTTAGAAAATCCCTAATTTCAGGGATCGCTTTTTGTTTATTTACTGTTTCCATTTACTCATACGATCCTGCGGC
TCGGTTTGATAAAAATGAAAAACCGAAAGAGCTGGAAGGAGTGGGAGTTCAGGAGAAGTTGGGTAATCAACTTGATCTTT
CCCTTTCTTTCCGAGATGAAACCGGAAAATCGATTCTCTTAAGTTCTTTTTTTAAACGAGATAAACCTGTACTTCTATCT
CTTGTTTATTATAAATGTCCTACGTTGTGCAATTTTCACCTTAACGGTGTTACAGATGTACTCAAAAAACTAAGTTGGGA
AGTAGGAAACGAATTTGAATACGTTGCAGTATCTTTTGATCCCAAAGAAACTTTTGATCTCGCTTCCGCCAAAAAGAATG
CTTATCTAAAAGAATACGCTCGAGGTAACGGACAAGGTTGGCATTTCTTAACGGGAGATCAAAAGGAGATCACAGCACTT
GCAGAATCAGTTGGGTTTTCCTATAAATGGAATTCGGAAAATGAACAATGGATACATTCTTCTGTCGCTTATATCATCAC
ACCTTCGGGAAAAATTTCCCGTTATCTTCATGGGATTACTTTTGATGAAAGAACTTTGAAACTTTCTTTATTAGAAGCTT
CCGATGGTAAAATAGGGGATTTCACAGATCAATTTGCCCTTTTTTGCTTTCAATTTGACCCGGGCAAAAATACATATACT
TTGTACGCTTATAATATTATGAAACTGGGTGGATTCTTCACTCTTCTCATTATGGCGGCGTTCTTGATCCCATTCTGGAT
CAGGCATAACAGAAATTCCGAACTCATTAGGAAGGAGTAA

Upstream 100 bases:

>100_bases
GCTTATCTTTCTTTTTTACACCCAGGTGTTAAGGAACATTCTCTCAACCTTCCTGCGAACATTCAGGCAAAATAATCTGG
GAAAATCCCGGAGTTAAATC

Downstream 100 bases:

>100_bases
CTTCAATAAAATGACCTGGTTGAACCTCATTACGGCAACGAGTTTTATGCCGGTTCAGGCTTCCGAAGTAGCAAAGAATG
TAGATCATCTCTATCTCTTT

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: SCO1/SenC Family Protein; SCO1/SenC/PrrC Family Protein; SenC/PrrC; Cytochrome C Oxidase Synthesis Factor; Respiratory System Biogenesis Protein; SenC/PrrC-Like

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MAFRKSLISGIAFCLFTVSIYSYDPAARFDKNEKPKELEGVGVQEKLGNQLDLSLSFRDETGKSILLSSFFKRDKPVLLS
LVYYKCPTLCNFHLNGVTDVLKKLSWEVGNEFEYVAVSFDPKETFDLASAKKNAYLKEYARGNGQGWHFLTGDQKEITAL
AESVGFSYKWNSENEQWIHSSVAYIITPSGKISRYLHGITFDERTLKLSLLEASDGKIGDFTDQFALFCFQFDPGKNTYT
LYAYNIMKLGGFFTLLIMAAFLIPFWIRHNRNSELIRKE

Sequences:

>Translated_279_residues
MAFRKSLISGIAFCLFTVSIYSYDPAARFDKNEKPKELEGVGVQEKLGNQLDLSLSFRDETGKSILLSSFFKRDKPVLLS
LVYYKCPTLCNFHLNGVTDVLKKLSWEVGNEFEYVAVSFDPKETFDLASAKKNAYLKEYARGNGQGWHFLTGDQKEITAL
AESVGFSYKWNSENEQWIHSSVAYIITPSGKISRYLHGITFDERTLKLSLLEASDGKIGDFTDQFALFCFQFDPGKNTYT
LYAYNIMKLGGFFTLLIMAAFLIPFWIRHNRNSELIRKE
>Mature_278_residues
AFRKSLISGIAFCLFTVSIYSYDPAARFDKNEKPKELEGVGVQEKLGNQLDLSLSFRDETGKSILLSSFFKRDKPVLLSL
VYYKCPTLCNFHLNGVTDVLKKLSWEVGNEFEYVAVSFDPKETFDLASAKKNAYLKEYARGNGQGWHFLTGDQKEITALA
ESVGFSYKWNSENEQWIHSSVAYIITPSGKISRYLHGITFDERTLKLSLLEASDGKIGDFTDQFALFCFQFDPGKNTYTL
YAYNIMKLGGFFTLLIMAAFLIPFWIRHNRNSELIRKE

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31882; Mature: 31751

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFRKSLISGIAFCLFTVSIYSYDPAARFDKNEKPKELEGVGVQEKLGNQLDLSLSFRDE
CCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHCCCCHHHCCCEEEEEEEECCC
TGKSILLSSFFKRDKPVLLSLVYYKCPTLCNFHLNGVTDVLKKLSWEVGNEFEYVAVSFD
CCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEC
PKETFDLASAKKNAYLKEYARGNGQGWHFLTGDQKEITALAESVGFSYKWNSENEQWIHS
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHC
SVAYIITPSGKISRYLHGITFDERTLKLSLLEASDGKIGDFTDQFALFCFQFDPGKNTYT
CEEEEECCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEE
LYAYNIMKLGGFFTLLIMAAFLIPFWIRHNRNSELIRKE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFRKSLISGIAFCLFTVSIYSYDPAARFDKNEKPKELEGVGVQEKLGNQLDLSLSFRDE
CHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHCCCCHHHCCCEEEEEEEECCC
TGKSILLSSFFKRDKPVLLSLVYYKCPTLCNFHLNGVTDVLKKLSWEVGNEFEYVAVSFD
CCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEC
PKETFDLASAKKNAYLKEYARGNGQGWHFLTGDQKEITALAESVGFSYKWNSENEQWIHS
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHC
SVAYIITPSGKISRYLHGITFDERTLKLSLLEASDGKIGDFTDQFALFCFQFDPGKNTYT
CEEEEECCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEE
LYAYNIMKLGGFFTLLIMAAFLIPFWIRHNRNSELIRKE
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA