| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
Click here to switch to the map view.
The map label for this gene is pdtaS [H]
Identifier: 45656010
GI number: 45656010
Start: 116680
End: 118833
Strand: Direct
Name: pdtaS [H]
Synonym: LIC10099
Alternate gene names: 45656010
Gene position: 116680-118833 (Clockwise)
Preceding gene: 45656003
Following gene: 45656014
Centisome position: 2.73
GC content: 35.65
Gene sequence:
>2154_bases TTGATCATTTTGTCTCTTCGTTTCAAAGAAATCGTAAAGATCTGCGGAATCATTTTTATTTCTGGAATGATCTATTATGT CCTCGCGCTGATTGGAAGGAAAACTGCGATTTATCCAAGTTATGCTGCCGCGATTTGGCCTGCTTCTGGAGCAGCACTTG GTTTCACTTTACTTTTTGGAAATTATGCGGTTTTAGGAGTTTTTTTAGCTTCTGTTCTTTTCAACTTTGGAACGGGTATA TTATCCGGAGATAATTTATATCTTAACTTTTTGATCGGTTTTTTTTCTGCATTTCAAAGCTATGTTGGAAAGACCGTTCT TACCCGTAAGATTCCCGGATATAAGATTTCCGATCGTACTCAGTTTGTATTTCTTTTTATTTTTCTAGAAGCGATTGTAT GTGTAATCAACGCGACCGGTTCTGTGGCTTCGATGTACTTTTTGGGAGAGATCGACTTATCCTCAATTCGTCAGAGTTGG TTGACTTGGTGGGTGGGAGAAGTACTTGGAGTTTATGTAGGAGCACCGTTTATTCTGTTTTGGTTTAGAGGGCCATACAA GTTATTTCGATGGAAAGAATTTTTTGAATCTGCAATATTACTTTTTTTAATCGTATTTTTTTCTCTTACTTCATTTGATT TAACTACTTCAGTTTTTTTCTTCAATTATTCTTTAGGTTATGTTTTGGTTCCTCTGATTCTTTGGTCGGCATTTCGATTG GGAGAACGGGCCAGCAGTTTAGCAGTTATCCTTTCTTCTATCATAGCGATCTTTGGATCGATTCCTACAAGGTTCAATGC GGAATCTATTGGGGAGTCTAGTATTTTACTTCAGTTCTTTATCGCAGTTTTATCCATCACGAGTTTACTTGTTGTGAGTA TGGTGAATGAAAGAAAAGAAGTGGAAGATCAGCTTAGAATTTCTCATCAAAGTTTAGAAGAGAAAGTGGAAGAAAGAACT CATGAACTTCTTCGTTCTAATGAAATTCTTCGAGAAGAAATTCAAGAAAAGAATGAAGCAAGGGCCGCTCTTGAAAAAAG CCAGACTCGATATATGGGATTGTTTGAACACCTTCCCGTTGCAATTATCGAGGCAGACTATTCTGAACTCAAACGAGTTT TAGATTGTCTTCCTTCTGATATTCAAGGGGACATTTTTTCCGATTACATCGAAACACGTCCCGATTTTGTTCGGCATTGT TTTAATTCGATCCAAGTAGTTGGAGTAAATCAAGAAACTGTAAATTTGTTGAGGGTCGGATCTATAGATGAGGTTTATAA AGGCTGGAGATTTTTTTTCAGTCAGGATAATTTTAAAGTTTTTAAAAGAGTTTTAAGAAAGATTCGCGAAAAATCTTATT TTTACGAAGTTGAAGTTGGTTTTAGGGTTAAGGATAATACAAGACTTGACATCAAAATTCGCTGGTCCGTTCCGCCTGGT TTTGAATCTTCTCTTTCTAGTGTGATTGTGACTCTTCTTGATTTTACAGAAATCAAATCCGCAGAAAGAAAGTTACAACT CTCTCTGAACGAAAAAGAGGTTATGTTGAAGGAAATTCATCATAGAGTAAAAAATAATCTTCAAGTGATTTCTTCTTTAT TATCCATGCAATCCGATTACGTTCAGGATAAACAAAGCCTTTCTGTTTTTATAGAAAGCCAGAATCGACTCAGGACGATG TCCATGATTCATGAGGAACTTTATCAATCCGAGAATTTGGGTAAAATTCAATATTCTGTTTATATCGAAAAACTTTTAAA TCAACTTTTCCAGGTTTATGGAAAATCAGATTCGGTTGTATTAGTAACTTTATTAGAGCCTTTGGATATTACGGTTAACC GTGCAATTCCGATCGGATTGATTATCAACGAATTAGTTTCAAATTCTTTAAAGTATGCTTTTCCGGAAGGTAGATCAATT CCTAACAAACCGGAGTTAAGAGTCTCGTTTTCTAAATCAGGTGAAAATTTAGAAATGCGTGTTGAAGACAATGGAATTGG TATGCCTTTTGGTTTTGATCTGAAGGATTCTAATTCGCTCGGATTAAAACTTGTGAATATACTTGTGAGACAACTAGGTG GTAAGATCGACTTTTCATCTGACTCTAAAAAAGGAACTCAGTTTAAAATTCATATTCCTCTTTCGATTGGTTGA
Upstream 100 bases:
>100_bases AATTTTCCCGAAAGGATGGAATCCTTCGTCAAAAATCATAAAAGGCTGGTCAGAGAATAGTAGTTCTTCGATTCTCATTA TAGAACAAATTTAATTTGGA
Downstream 100 bases:
>100_bases TTTAGAACTTGTCCCAAATCCTGTCGAGCGCCAATAGAAGCGAGACGCTGAGTTTCACCGATCCTTAAGAGGTGTTTGCT GAATTTTTCGAATGACCCGC
Product: histidine kinase sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MIILSLRFKEIVKICGIIFISGMIYYVLALIGRKTAIYPSYAAAIWPASGAALGFTLLFGNYAVLGVFLASVLFNFGTGI LSGDNLYLNFLIGFFSAFQSYVGKTVLTRKIPGYKISDRTQFVFLFIFLEAIVCVINATGSVASMYFLGEIDLSSIRQSW LTWWVGEVLGVYVGAPFILFWFRGPYKLFRWKEFFESAILLFLIVFFSLTSFDLTTSVFFFNYSLGYVLVPLILWSAFRL GERASSLAVILSSIIAIFGSIPTRFNAESIGESSILLQFFIAVLSITSLLVVSMVNERKEVEDQLRISHQSLEEKVEERT HELLRSNEILREEIQEKNEARAALEKSQTRYMGLFEHLPVAIIEADYSELKRVLDCLPSDIQGDIFSDYIETRPDFVRHC FNSIQVVGVNQETVNLLRVGSIDEVYKGWRFFFSQDNFKVFKRVLRKIREKSYFYEVEVGFRVKDNTRLDIKIRWSVPPG FESSLSSVIVTLLDFTEIKSAERKLQLSLNEKEVMLKEIHHRVKNNLQVISSLLSMQSDYVQDKQSLSVFIESQNRLRTM SMIHEELYQSENLGKIQYSVYIEKLLNQLFQVYGKSDSVVLVTLLEPLDITVNRAIPIGLIINELVSNSLKYAFPEGRSI PNKPELRVSFSKSGENLEMRVEDNGIGMPFGFDLKDSNSLGLKLVNILVRQLGGKIDFSSDSKKGTQFKIHIPLSIG
Sequences:
>Translated_717_residues MIILSLRFKEIVKICGIIFISGMIYYVLALIGRKTAIYPSYAAAIWPASGAALGFTLLFGNYAVLGVFLASVLFNFGTGI LSGDNLYLNFLIGFFSAFQSYVGKTVLTRKIPGYKISDRTQFVFLFIFLEAIVCVINATGSVASMYFLGEIDLSSIRQSW LTWWVGEVLGVYVGAPFILFWFRGPYKLFRWKEFFESAILLFLIVFFSLTSFDLTTSVFFFNYSLGYVLVPLILWSAFRL GERASSLAVILSSIIAIFGSIPTRFNAESIGESSILLQFFIAVLSITSLLVVSMVNERKEVEDQLRISHQSLEEKVEERT HELLRSNEILREEIQEKNEARAALEKSQTRYMGLFEHLPVAIIEADYSELKRVLDCLPSDIQGDIFSDYIETRPDFVRHC FNSIQVVGVNQETVNLLRVGSIDEVYKGWRFFFSQDNFKVFKRVLRKIREKSYFYEVEVGFRVKDNTRLDIKIRWSVPPG FESSLSSVIVTLLDFTEIKSAERKLQLSLNEKEVMLKEIHHRVKNNLQVISSLLSMQSDYVQDKQSLSVFIESQNRLRTM SMIHEELYQSENLGKIQYSVYIEKLLNQLFQVYGKSDSVVLVTLLEPLDITVNRAIPIGLIINELVSNSLKYAFPEGRSI PNKPELRVSFSKSGENLEMRVEDNGIGMPFGFDLKDSNSLGLKLVNILVRQLGGKIDFSSDSKKGTQFKIHIPLSIG >Mature_717_residues MIILSLRFKEIVKICGIIFISGMIYYVLALIGRKTAIYPSYAAAIWPASGAALGFTLLFGNYAVLGVFLASVLFNFGTGI LSGDNLYLNFLIGFFSAFQSYVGKTVLTRKIPGYKISDRTQFVFLFIFLEAIVCVINATGSVASMYFLGEIDLSSIRQSW LTWWVGEVLGVYVGAPFILFWFRGPYKLFRWKEFFESAILLFLIVFFSLTSFDLTTSVFFFNYSLGYVLVPLILWSAFRL GERASSLAVILSSIIAIFGSIPTRFNAESIGESSILLQFFIAVLSITSLLVVSMVNERKEVEDQLRISHQSLEEKVEERT HELLRSNEILREEIQEKNEARAALEKSQTRYMGLFEHLPVAIIEADYSELKRVLDCLPSDIQGDIFSDYIETRPDFVRHC FNSIQVVGVNQETVNLLRVGSIDEVYKGWRFFFSQDNFKVFKRVLRKIREKSYFYEVEVGFRVKDNTRLDIKIRWSVPPG FESSLSSVIVTLLDFTEIKSAERKLQLSLNEKEVMLKEIHHRVKNNLQVISSLLSMQSDYVQDKQSLSVFIESQNRLRTM SMIHEELYQSENLGKIQYSVYIEKLLNQLFQVYGKSDSVVLVTLLEPLDITVNRAIPIGLIINELVSNSLKYAFPEGRSI PNKPELRVSFSKSGENLEMRVEDNGIGMPFGFDLKDSNSLGLKLVNILVRQLGGKIDFSSDSKKGTQFKIHIPLSIG
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: COG3920
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 81678; Mature: 81678
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIILSLRFKEIVKICGIIFISGMIYYVLALIGRKTAIYPSYAAAIWPASGAALGFTLLFG CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHH NYAVLGVFLASVLFNFGTGILSGDNLYLNFLIGFFSAFQSYVGKTVLTRKIPGYKISDRT HHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEECCCH QFVFLFIFLEAIVCVINATGSVASMYFLGEIDLSSIRQSWLTWWVGEVLGVYVGAPFILF HHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH WFRGPYKLFRWKEFFESAILLFLIVFFSLTSFDLTTSVFFFNYSLGYVLVPLILWSAFRL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GERASSLAVILSSIIAIFGSIPTRFNAESIGESSILLQFFIAVLSITSLLVVSMVNERKE HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEDQLRISHQSLEEKVEERTHELLRSNEILREEIQEKNEARAALEKSQTRYMGLFEHLPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE AIIEADYSELKRVLDCLPSDIQGDIFSDYIETRPDFVRHCFNSIQVVGVNQETVNLLRVG EEEECCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCEEEEECCHHHHHHHCCC SIDEVYKGWRFFFSQDNFKVFKRVLRKIREKSYFYEVEVGFRVKDNTRLDIKIRWSVPPG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEEECCCCC FESSLSSVIVTLLDFTEIKSAERKLQLSLNEKEVMLKEIHHRVKNNLQVISSLLSMQSDY HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQDKQSLSVFIESQNRLRTMSMIHEELYQSENLGKIQYSVYIEKLLNQLFQVYGKSDSVV HHCHHHHHEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE LVTLLEPLDITVNRAIPIGLIINELVSNSLKYAFPEGRSIPNKPELRVSFSKSGENLEMR EEEEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEE VEDNGIGMPFGFDLKDSNSLGLKLVNILVRQLGGKIDFSSDSKKGTQFKIHIPLSIG ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MIILSLRFKEIVKICGIIFISGMIYYVLALIGRKTAIYPSYAAAIWPASGAALGFTLLFG CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHH NYAVLGVFLASVLFNFGTGILSGDNLYLNFLIGFFSAFQSYVGKTVLTRKIPGYKISDRT HHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEECCCH QFVFLFIFLEAIVCVINATGSVASMYFLGEIDLSSIRQSWLTWWVGEVLGVYVGAPFILF HHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH WFRGPYKLFRWKEFFESAILLFLIVFFSLTSFDLTTSVFFFNYSLGYVLVPLILWSAFRL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH GERASSLAVILSSIIAIFGSIPTRFNAESIGESSILLQFFIAVLSITSLLVVSMVNERKE HHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEDQLRISHQSLEEKVEERTHELLRSNEILREEIQEKNEARAALEKSQTRYMGLFEHLPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE AIIEADYSELKRVLDCLPSDIQGDIFSDYIETRPDFVRHCFNSIQVVGVNQETVNLLRVG EEEECCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHCCEEEEECCHHHHHHHCCC SIDEVYKGWRFFFSQDNFKVFKRVLRKIREKSYFYEVEVGFRVKDNTRLDIKIRWSVPPG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEEEEECCCCC FESSLSSVIVTLLDFTEIKSAERKLQLSLNEKEVMLKEIHHRVKNNLQVISSLLSMQSDY HHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQDKQSLSVFIESQNRLRTMSMIHEELYQSENLGKIQYSVYIEKLLNQLFQVYGKSDSVV HHCHHHHHEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE LVTLLEPLDITVNRAIPIGLIINELVSNSLKYAFPEGRSIPNKPELRVSFSKSGENLEMR EEEEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEE VEDNGIGMPFGFDLKDSNSLGLKLVNILVRQLGGKIDFSSDSKKGTQFKIHIPLSIG ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]