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The map label for this gene is yciO [C]

Identifier: 45655934

GI number: 45655934

Start: 23118

End: 23726

Strand: Direct

Name: yciO [C]

Synonym: LIC10020

Alternate gene names: 45655934

Gene position: 23118-23726 (Clockwise)

Preceding gene: 45655933

Following gene: 45655935

Centisome position: 0.54

GC content: 32.35

Gene sequence:

>609_bases
ATGATTCTTTCTCTTCATTCCATCAATCCTGAAAAAAGAAAGTTACAACAGATTTCGGATCAGTTGTCTCAAGGTAAAAT
TTATATATTTCCGACGGATACGGTTTATGCTTTGTTGGCAGACTCTCAATCTAAACTGGGTGTTGAAAAATTATATGAAC
TGAAAAATATTTCTAAAAATCAACCTCTCTCTTTGATTTGTCCAAGTATTTCGATTGCTTCCAATTATATAGAACATCTT
TCGAATGATGCATTTCGATTGATGAAAAAAATCACACCGGGTCCTTTTACTTTTATTACGAGCGCTAATAAACATCTTCC
AAGGGTTTCTTTTTCTAATCAGAAAGAAAAACAAATCGGAATTCGAATTCCGGATGCAATTTATTTACAAGAGTTAATGA
AAATTCATCCTAATCCGTTGACTTCTACTTCCGTTTTTGCTAATGATGAATTTATCATCGAGGTCGATTCTTTAGAAAAA
ATATACGGATCTCGTGTAGAAGGGATTGTAGACGGAGGAATTTTAAAAGTGGAACTTTCTACAATCTTAGATCTAACTGG
AGATGAAATTACAATTATAAGAGAAGGTAAGGGATTTGAACTTTTATAA

Upstream 100 bases:

>100_bases
AGCGATTTTTTTTGCCAGCGACGCATCTTCTTATGTAACAGGACAAACGATTGTAGTAGACGGAGGAATCACCGCAGGAC
TTTAAACAGTCTAACTTTTA

Downstream 100 bases:

>100_bases
TTGATGTCGGATTAAAATTTTTATAATCGTTTTACTGATAACTATATAATAGAATTGTTGAAAAATTACTTCTCCATCTG
TTTCTATTTTATGGAAACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MILSLHSINPEKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSISIASNYIEHL
SNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIGIRIPDAIYLQELMKIHPNPLTSTSVFANDEFIIEVDSLEK
IYGSRVEGIVDGGILKVELSTILDLTGDEITIIREGKGFELL

Sequences:

>Translated_202_residues
MILSLHSINPEKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSISIASNYIEHL
SNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIGIRIPDAIYLQELMKIHPNPLTSTSVFANDEFIIEVDSLEK
IYGSRVEGIVDGGILKVELSTILDLTGDEITIIREGKGFELL
>Mature_202_residues
MILSLHSINPEKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSISIASNYIEHL
SNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIGIRIPDAIYLQELMKIHPNPLTSTSVFANDEFIIEVDSLEK
IYGSRVEGIVDGGILKVELSTILDLTGDEITIIREGKGFELL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=200, Percent_Identity=33, Blast_Score=107, Evalue=5e-25,
Organism=Drosophila melanogaster, GI78707274, Length=192, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22647; Mature: 22647

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSLHSINPEKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKN
CEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCCCC
QPLSLICPSISIASNYIEHLSNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIG
CCEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHCCC
IRIPDAIYLQELMKIHPNPLTSTSVFANDEFIIEVDSLEKIYGSRVEGIVDGGILKVELS
CCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECHHHHHHHHHHCCEECCCEEEEEHH
TILDLTGDEITIIREGKGFELL
HHHCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MILSLHSINPEKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKN
CEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHCCCCC
QPLSLICPSISIASNYIEHLSNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIG
CCEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHCCC
IRIPDAIYLQELMKIHPNPLTSTSVFANDEFIIEVDSLEKIYGSRVEGIVDGGILKVELS
CCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECHHHHHHHHHHCCEECCCEEEEEHH
TILDLTGDEITIIREGKGFELL
HHHCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]