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The map label for this gene is 45358799

Identifier: 45358799

GI number: 45358799

Start: 1222830

End: 1223573

Strand: Direct

Name: 45358799

Synonym: MMP1236

Alternate gene names: NA

Gene position: 1222830-1223573 (Clockwise)

Preceding gene: 45358798

Following gene: 45358800

Centisome position: 73.61

GC content: 31.59

Gene sequence:

>744_bases
ATGAAATTTTTTCAAGAAAAAATATCCATTAAAGAAACAAACATTCTTTTAAAAGTAGATAATCCCAAATTTTTTAAAAT
GGCGAAAAATACAATTATTAATGAAAGATTAAACCTTGAAAATTATATTTTAAGAAATCCCATATTTTTAACTAGTTATT
CTCCCGTTGAAGTGCCAGATAATGCACCAGAAATTATAAAATTAATGGCTGAAGCAGGGTTTAACGCAGATGTTGGACCA
ATGGCCGCAGTTGCAGGAACATTTAGCCAGTTAATTATTGAAAATTTAATTGAAAATGACTGTAAAAATGCAATTTCTGA
AAATGGTGGCGACATCTGTTTAAAATGCGAAATGGACACAACAGTTGGACTTTATGCAGGAAATTCATCACTTTCTGGAA
ATTTGGGGTTTAAACTAAAAAAAGAAAAAATGAAAAATGGATATGGAATCTGTACTTCATCGGGAACTGTTGGACACTCG
GTAAGCCTTGGAAATGCTGATTCCATTACAGTTTTTTCAAAATCTGCAATTATTGCCGATGCAGCTGCAACTTCAATTGG
AAATTTTGCAGTTGGAAATGCTGTTGATGCAATAAATAAATGTCTTGAAAAAGCCGAAACCATATCAAAAATTGATGGTG
TTTTTGTGTGTATGGGCGAACATGCTGGAAAAATTGGAAAAATACCTCAATTGATAAAGACTGATAAAAAAGAAGTTTTG
GGAAATGTTTTTGAAATGGTTTGA

Upstream 100 bases:

>100_bases
AAGTTCCGATATGGAAAAAGGAATTTTCAAAAGATGGTTCTTACTGGGTAGAACAACACTAAATCATTCTAATTTATTTT
AATTTTTAAAAAGGAATACT

Downstream 100 bases:

>100_bases
TGTAAACTTATAGTATACTTGGTGTAAATCATGAATCCAAAAGCAATTAAATGTATCATTTTAATTTTTGGAATAATATT
TTGTGTAATTCTTACAGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPDNAPEIIKLMAEAGFNADVGP
MAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDTTVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHS
VSLGNADSITVFSKSAIIADAAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
GNVFEMV

Sequences:

>Translated_247_residues
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPDNAPEIIKLMAEAGFNADVGP
MAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDTTVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHS
VSLGNADSITVFSKSAIIADAAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
GNVFEMV
>Mature_247_residues
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPDNAPEIIKLMAEAGFNADVGP
MAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDTTVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHS
VSLGNADSITVFSKSAIIADAAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
GNVFEMV

Specific function: Unknown

COG id: COG2122

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0280 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1236_METMP (Q6LXW0)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988356.1
- ProteinModelPortal:   Q6LXW0
- SMR:   Q6LXW0
- GeneID:   2761894
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1236
- NMPDR:   fig|267377.1.peg.1236
- HOGENOM:   HBG458461
- OMA:   ADVGPMA
- ProtClustDB:   PRK04334
- BioCyc:   MMAR267377:MMP1236-MONOMER
- HAMAP:   MF_01079
- InterPro:   IPR023156
- InterPro:   IPR003374
- InterPro:   IPR007183
- PIRSF:   PIRSF006421

Pfam domain/function: PF02424 ApbE

EC number: NA

Molecular weight: Translated: 26526; Mature: 26526

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPD
CCHHHHHCCEEECEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCC
NAPEIIKLMAEAGFNADVGPMAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDT
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
TVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHSVSLGNADSITVFSKSAIIAD
EEEEEECCCCCCCCCCCEEEHHHHCCCCEEEECCCCCCCEEECCCCCEEEEEECCHHHHH
AAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHCCHHHHH
GNVFEMV
HHHHHCC
>Mature Secondary Structure
MKFFQEKISIKETNILLKVDNPKFFKMAKNTIINERLNLENYILRNPIFLTSYSPVEVPD
CCHHHHHCCEEECEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCC
NAPEIIKLMAEAGFNADVGPMAAVAGTFSQLIIENLIENDCKNAISENGGDICLKCEMDT
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
TVGLYAGNSSLSGNLGFKLKKEKMKNGYGICTSSGTVGHSVSLGNADSITVFSKSAIIAD
EEEEEECCCCCCCCCCCEEEHHHHCCCCEEEECCCCCCCEEECCCCCEEEEEECCHHHHH
AAATSIGNFAVGNAVDAINKCLEKAETISKIDGVFVCMGEHAGKIGKIPQLIKTDKKEVL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHHHHCCHHHHH
GNVFEMV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA