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The map label for this gene is ybfF [C]

Identifier: 45358733

GI number: 45358733

Start: 1153909

End: 1154601

Strand: Direct

Name: ybfF [C]

Synonym: MMP1170

Alternate gene names: 45358733

Gene position: 1153909-1154601 (Clockwise)

Preceding gene: 45358732

Following gene: 45358734

Centisome position: 69.47

GC content: 31.89

Gene sequence:

>693_bases
ATGGAAAAAAATGATATTTTTGTTGTAATTCCAGCATATAATGAAGAAAAAATGATTAAAAATACATTAATCAACTTAAA
AAGTCACGGTTATGAAAATATCATTGTAGTTGACGATGGAAGTAGGGACAACACGTCAAAAATTGCAATCTCAGAAGAAG
TAATTGTCTGCAAGCATATTATTAATAGGGGGCTTGGCGGAGCACTAAAAACCGGTTTAAAATGTGCAGTAAAATATAAT
CCAAAAGTAATCGTAACCTTTGATGCAGATGGACAGCACGACCCTGAAGACATTTTCAAAGTTTCAGAGCCAATACTTGA
AGATAGTTTTGATGTTGTTGTTGGAAGTAGGCTCATTGATGAAAATGAATTAAAAAATATGCCCCTAATAAAAAAAATAG
GAAACTGGGGTTTAAATTTTATAACTTACTTAATGGGCGGACGAATGGTCACGGACAGCCAGGGTGGACTTCGGGCTTTT
TCATACGACGCTGCAGAAATCGTTTCAAAACAGCTTAAAAGCAATAGGTATGAAGTATCTTCTGAATTTATAGTACTTTT
CAAAAAAAATAACTTAAAATTTAAAGAAGTACCGATAAAAACGATATATACAGAATATTCAATGGCAAGAGGAACAAACG
TCATTACCGGATTTAAAATTCTATTTAAGTTATTAATTCAAAAACTAATTTAA

Upstream 100 bases:

>100_bases
TACAAACAAGTGTTTTTTATACAATAACTTTTTTTATATATGACGAGCTTAAATATAGATAATATTTAAAATTTAAATAT
TCGAGCGATTTTGGGATAGT

Downstream 100 bases:

>100_bases
CGGCGATAAACATGTTCAAAATTAGAAACATAATCACGATTTCAGATTATGTAACTGTTATAAACATTATTTTTGGAATG
CTCGCAATACTGCTCCACGA

Product: glycosyl transferase family protein

Products: GDP; dolichyl D-mannosyl phosphate

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MEKNDIFVVIPAYNEEKMIKNTLINLKSHGYENIIVVDDGSRDNTSKIAISEEVIVCKHIINRGLGGALKTGLKCAVKYN
PKVIVTFDADGQHDPEDIFKVSEPILEDSFDVVVGSRLIDENELKNMPLIKKIGNWGLNFITYLMGGRMVTDSQGGLRAF
SYDAAEIVSKQLKSNRYEVSSEFIVLFKKNNLKFKEVPIKTIYTEYSMARGTNVITGFKILFKLLIQKLI

Sequences:

>Translated_230_residues
MEKNDIFVVIPAYNEEKMIKNTLINLKSHGYENIIVVDDGSRDNTSKIAISEEVIVCKHIINRGLGGALKTGLKCAVKYN
PKVIVTFDADGQHDPEDIFKVSEPILEDSFDVVVGSRLIDENELKNMPLIKKIGNWGLNFITYLMGGRMVTDSQGGLRAF
SYDAAEIVSKQLKSNRYEVSSEFIVLFKKNNLKFKEVPIKTIYTEYSMARGTNVITGFKILFKLLIQKLI
>Mature_230_residues
MEKNDIFVVIPAYNEEKMIKNTLINLKSHGYENIIVVDDGSRDNTSKIAISEEVIVCKHIINRGLGGALKTGLKCAVKYN
PKVIVTFDADGQHDPEDIFKVSEPILEDSFDVVVGSRLIDENELKNMPLIKKIGNWGLNFITYLMGGRMVTDSQGGLRAF
SYDAAEIVSKQLKSNRYEVSSEFIVLFKKNNLKFKEVPIKTIYTEYSMARGTNVITGFKILFKLLIQKLI

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7019323, Length=238, Percent_Identity=26.0504201680672, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI4503363, Length=231, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25146207, Length=240, Percent_Identity=28.75, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71999402, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6325029, Length=220, Percent_Identity=26.3636363636364, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582769, Length=253, Percent_Identity=27.6679841897233, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24585265, Length=232, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.83

Molecular weight: Translated: 25945; Mature: 25945

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNDIFVVIPAYNEEKMIKNTLINLKSHGYENIIVVDDGSRDNTSKIAISEEVIVCKHI
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHH
INRGLGGALKTGLKCAVKYNPKVIVTFDADGQHDPEDIFKVSEPILEDSFDVVVGSRLID
HHCCCCHHHHHCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCC
ENELKNMPLIKKIGNWGLNFITYLMGGRMVTDSQGGLRAFSYDAAEIVSKQLKSNRYEVS
HHHHCCCCHHHHHCCCHHHHHHHHHCCEEEECCCCCCEEECCCHHHHHHHHHHCCCEEEC
SEFIVLFKKNNLKFKEVPIKTIYTEYSMARGTNVITGFKILFKLLIQKLI
CEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MEKNDIFVVIPAYNEEKMIKNTLINLKSHGYENIIVVDDGSRDNTSKIAISEEVIVCKHI
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHH
INRGLGGALKTGLKCAVKYNPKVIVTFDADGQHDPEDIFKVSEPILEDSFDVVVGSRLID
HHCCCCHHHHHCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCC
ENELKNMPLIKKIGNWGLNFITYLMGGRMVTDSQGGLRAFSYDAAEIVSKQLKSNRYEVS
HHHHCCCCHHHHHCCCHHHHHHHHHCCEEEECCCCCCEEECCCHHHHHHHHHHCCCEEEC
SEFIVLFKKNNLKFKEVPIKTIYTEYSMARGTNVITGFKILFKLLIQKLI
CEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPmannose; dolichyl phosphate

Specific reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]