Click here to switch to the map view.

The map label for this gene is 45358579

Identifier: 45358579

GI number: 45358579

Start: 1003113

End: 1004354

Strand: Direct

Name: 45358579

Synonym: MMP1016

Alternate gene names: NA

Gene position: 1003113-1004354 (Clockwise)

Preceding gene: 45358578

Following gene: 45358581

Centisome position: 60.39

GC content: 34.7

Gene sequence:

>1242_bases
TTGAAAGAGCAAGTAATTGACATAGCCACAAAAGACGTTGTTACGGTAAGTCCTGATACGCCAATATCAAAAGCTGTCGG
AACTATGGAAAACAAAAAATTCCATAATTTGATAGTTGAGAAAGATGATGACATATATCTAGTAACAATGCATGATTTGC
TACTTGGAAACTCTGTGCATCAACAGGTTGAAGATCTGATGTTTAGACCATTTTGTGTAAAAATGAATACGCAGGTGATT
GATGCCGCTTTTGAAATGATTAACAGCGGTCAGAGAGTAGCTCCAGTTATCGACGAAAATGACAAACTAATTGGAATTAT
TACTGATTACGATGTCATGAAGTGCGCAGCAGAGTCAGAGCTTTTGAAAGACGTTAAAATCGATAAAATAATGACGAAAA
GCCCCGTCACAATTGATATCGATGAAAGTATCGGTAAGGCAAGAAGTTTAATGATGAAATATAACATCGGAAGACTAATT
GTACTCGATATGGATGGAAAGCCTATTGGAATGGTTACAGAAGACGATATAGTTAAAAAGGTCTTCAAACCAAAAACCAA
AATGACAGTTGGAGAACTTACTGGCAACAAAGTGCCTAGAATGGCCCAGCCAGTATCAATGATAATAAATAAACCACTTA
TTACTGCAAATATAGGCGATTCAGTTGCGGAAGTTGCGGAAATACTCGAACAACAAGATATTAGAGGAATTCCAATATTT
AAAAACGATACATTAAGAGGTATCGTTACAAGACTTGATATTTTAAAATACTTAAGGGATTTAAGAGCTGAATCAATGGT
TGAAGTTGAAATTCAAGGTGATTTCGACGAAGACCAGAGAGAACTTGCAGAAAGGATATTATTTAATGAAATTAAGAAAA
TTGCCATTTATTCGAAAAAAATCCACTGGATTAAATTAGCTGTTAAAAAAGAAAGAGATAAAGGAGGAGTTCCAAACTAC
AGTGTAAAAACGTACGTAAAAACTCCAAGAAAACTCTACGTTGCAGAAGGAAAACCAAAACTTTCATCAACCAAAAGAAT
AGACTGGGACGGCGAAGAAATGGAATTAGTTGCCGAAAAACAGAGATGGGACTTTATTGAAGTATTAAAAGATGCGCTTG
ATTCTGTAAAAAAACAGATGAACATTGATAAAGAAAAAAGACAGTCTAAAGCATTAAATGTTGGTAAAAAAGAAATAATG
GCTGAAGAATTTTCCGAAACTCCTACTGAAAACGAGGAGTAA

Upstream 100 bases:

>100_bases
AAAACGGAGAATTATCACTGCTTTTTCAAAATCATATCGGAAACCATATAAAATCTCAAAATCATAAAATATACCATGGA
CTCGAAAAGGGGTGAAAGTC

Downstream 100 bases:

>100_bases
ATTCTCTTTTTTATTTATTTTTTTAAAAAAATTAAAAATTTTTAAAAGTTTATTTCATCTTCAACAAATGTTTTGTGAAG
TGTTTTTAAACAGGGTTCGA

Product: putative CBS domain-containing signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MKEQVIDIATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVHQQVEDLMFRPFCVKMNTQVI
DAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESELLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLI
VLDMDGKPIGMVTEDDIVKKVFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIF
KNDTLRGIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERILFNEIKKIAIYSKKIHWIKLAVKKERDKGGVPNY
SVKTYVKTPRKLYVAEGKPKLSSTKRIDWDGEEMELVAEKQRWDFIEVLKDALDSVKKQMNIDKEKRQSKALNVGKKEIM
AEEFSETPTENEE

Sequences:

>Translated_413_residues
MKEQVIDIATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVHQQVEDLMFRPFCVKMNTQVI
DAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESELLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLI
VLDMDGKPIGMVTEDDIVKKVFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIF
KNDTLRGIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERILFNEIKKIAIYSKKIHWIKLAVKKERDKGGVPNY
SVKTYVKTPRKLYVAEGKPKLSSTKRIDWDGEEMELVAEKQRWDFIEVLKDALDSVKKQMNIDKEKRQSKALNVGKKEIM
AEEFSETPTENEE
>Mature_413_residues
MKEQVIDIATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVHQQVEDLMFRPFCVKMNTQVI
DAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESELLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLI
VLDMDGKPIGMVTEDDIVKKVFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIF
KNDTLRGIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERILFNEIKKIAIYSKKIHWIKLAVKKERDKGGVPNY
SVKTYVKTPRKLYVAEGKPKLSSTKRIDWDGEEMELVAEKQRWDFIEVLKDALDSVKKQMNIDKEKRQSKALNVGKKEIM
AEEFSETPTENEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR014651 [H]

Pfam domain/function: PF00571 CBS [H]

EC number: NA

Molecular weight: Translated: 47005; Mature: 47005

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEQVIDIATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVH
CCCCEEEEECCCEEEECCCCCHHHHHHHHCCCHHHHEEEECCCCEEEEEEHHHHHCCHHH
QQVEDLMFRPFCVKMNTQVIDAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESE
HHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECEECCCCCEEEEEECHHHHHHHHHHH
LLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDIVKK
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEECCCEEEEEECCCCCEEEECHHHHHHH
VFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIF
HHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCEE
KNDTLRGIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERILFNEIKKIAIYSKK
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
IHWIKLAVKKERDKGGVPNYSVKTYVKTPRKLYVAEGKPKLSSTKRIDWDGEEMELVAEK
EEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
QRWDFIEVLKDALDSVKKQMNIDKEKRQSKALNVGKKEIMAEEFSETPTENEE
HCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKEQVIDIATKDVVTVSPDTPISKAVGTMENKKFHNLIVEKDDDIYLVTMHDLLLGNSVH
CCCCEEEEECCCEEEECCCCCHHHHHHHHCCCHHHHEEEECCCCEEEEEEHHHHHCCHHH
QQVEDLMFRPFCVKMNTQVIDAAFEMINSGQRVAPVIDENDKLIGIITDYDVMKCAAESE
HHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECEECCCCCEEEEEECHHHHHHHHHHH
LLKDVKIDKIMTKSPVTIDIDESIGKARSLMMKYNIGRLIVLDMDGKPIGMVTEDDIVKK
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHEECCCEEEEEECCCCCEEEECHHHHHHH
VFKPKTKMTVGELTGNKVPRMAQPVSMIINKPLITANIGDSVAEVAEILEQQDIRGIPIF
HHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCEE
KNDTLRGIVTRLDILKYLRDLRAESMVEVEIQGDFDEDQRELAERILFNEIKKIAIYSKK
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
IHWIKLAVKKERDKGGVPNYSVKTYVKTPRKLYVAEGKPKLSSTKRIDWDGEEMELVAEK
EEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
QRWDFIEVLKDALDSVKKQMNIDKEKRQSKALNVGKKEIMAEEFSETPTENEE
HCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]