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The map label for this gene is hmvA [H]

Identifier: 45358578

GI number: 45358578

Start: 1002569

End: 1002907

Strand: Direct

Name: hmvA [H]

Synonym: MMP1015

Alternate gene names: 45358578

Gene position: 1002569-1002907 (Clockwise)

Preceding gene: 45358577

Following gene: 45358579

Centisome position: 60.35

GC content: 30.38

Gene sequence:

>339_bases
ATGCCATATGATTCTAAAGATAAAATAAGAGGTCTTATTATGATACCAAAAGGAACCGTTAAAAGAATTATGAAAGAAAA
TACTGATATGAATGTATCAGCTGAATCTGTCGTAGCATTAGTTGAAATTTTACAGGAAATGGTTGTAACCACTACAAAAA
TCGCTGAAGAAAATGCTGCAAAAGACAAAAGAAAAACACTAAAAGCAAGAGATATCGAACAGTGCGATGCTGAAAGATTA
AGGAAAAAAGTGATCGAAGTTTCAGAAAGAACTGAAAAAGTCAACATGCTTACAAACGAAATTTTAAATGTTATTGCAAA
TGAACTTGAAAGATATTAA

Upstream 100 bases:

>100_bases
TGGAGATGAAAAATTAATTTAATTTATTTTTTTTAAATATTCTTTTGTGTTATTTTCCCATTTTTGATTTGCTGTTTTAT
ATAAGGTTTAAATAATTTAA

Downstream 100 bases:

>100_bases
TTATTAATGGTTCTTTTGTTAAAACAACGGAATTTATGATTAACATACAAATTTTAACTTAAATATTTAATTCCATGAAT
ATCAATATACTCTTCTTAAC

Product: transcription factor CBF/NF-Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MPYDSKDKIRGLIMIPKGTVKRIMKENTDMNVSAESVVALVEILQEMVVTTTKIAEENAAKDKRKTLKARDIEQCDAERL
RKKVIEVSERTEKVNMLTNEILNVIANELERY

Sequences:

>Translated_112_residues
MPYDSKDKIRGLIMIPKGTVKRIMKENTDMNVSAESVVALVEILQEMVVTTTKIAEENAAKDKRKTLKARDIEQCDAERL
RKKVIEVSERTEKVNMLTNEILNVIANELERY
>Mature_111_residues
PYDSKDKIRGLIMIPKGTVKRIMKENTDMNVSAESVVALVEILQEMVVTTTKIAEENAAKDKRKTLKARDIEQCDAERLR
KKVIEVSERTEKVNMLTNEILNVIANELERY

Specific function: Binds and compacts DNA to form nucleosome-like structures that contain positive DNA supercoils. Increases the resistance of DNA to thermal denaturation [H]

COG id: COG2036

COG function: function code B; Histones H3 and H4

Gene ontology:

Cell location: Cytoplasm (Potential). Chromosome (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal histone HMF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003958
- InterPro:   IPR009072 [H]

Pfam domain/function: PF00808 CBFD_NFYB_HMF [H]

EC number: NA

Molecular weight: Translated: 12865; Mature: 12734

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYDSKDKIRGLIMIPKGTVKRIMKENTDMNVSAESVVALVEILQEMVVTTTKIAEENAA
CCCCCCCHHCEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKRKTLKARDIEQCDAERLRKKVIEVSERTEKVNMLTNEILNVIANELERY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PYDSKDKIRGLIMIPKGTVKRIMKENTDMNVSAESVVALVEILQEMVVTTTKIAEENAA
CCCCCCHHCEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKRKTLKARDIEQCDAERLRKKVIEVSERTEKVNMLTNEILNVIANELERY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8464744 [H]