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The map label for this gene is 45357969

Identifier: 45357969

GI number: 45357969

Start: 405344

End: 406114

Strand: Direct

Name: 45357969

Synonym: MMP0406

Alternate gene names: NA

Gene position: 405344-406114 (Clockwise)

Preceding gene: 45357968

Following gene: 45357971

Centisome position: 24.4

GC content: 28.15

Gene sequence:

>771_bases
ATGAAAAAATTAGATAAAATTTACACGATTCCAAAAAAAATAGTCCTTGCTCCAATGGCTGGGATTACTGATGGCGATTT
TTGTTTGAAATATACCGATACTTTTGGAATTGTATGCCTTGGTGCATTCAATTTAGATTTTGACACAGATTTGGCAAGCA
AAAAAATTTGTAATCGCGGAAGAAAAGAATTTATTTACGATTTAATTGAAATTGATCAAAAAATAAGTTCTGAAATTGAA
AAAGCGAAAAAAAGCAATTCTTTAGTTTCTGTAAATATCCGTTTTAACGATTTTTCTAAAGCAAAATCCCATATAGTTGA
AATTTCAAAAAATGCAGATATTTTAGAATTAAACTGCCACTGCAGGCAGCCAGAAATAACTTATCTGAATCTCGGGCAGA
ATTTATTAAAATTCGAAAATGAATCCAAATTAATTAATTTTTTAGAAAATATTCAAAAATTAAATTTGGAAATTCCTATT
TTTTTAAAATTACGGGCTAATTTTTTAAAAGCCGAAGAATTAATAAAATCGCTTGACAAGGTTCGAGGATATTTTGATGG
AATACATATAGACTGTTTTAATCCTGGAAAAAATCATGCGGATTTAGAATACTTGAAAAAAATTAGGGAAAATTTCCCTG
AAAAAATAATAATTGGCAACAATTCGGTTAATTCTGTTGAAAGTGCAAAAGAAATGCTTGAATATGCCGATTTTGTATCT
GTAGCACGATGTGTACTGTCAAATAATATCGAATGGATTAATAAAATGTAA

Upstream 100 bases:

>100_bases
CCAGGTTTACACCTTGAAACAGGAAATTGATGAACAAAAAAATGTACCTTACAACTACATGTGCCCAATTTAAACTAATT
CTTTTTTTATTCGGGATTTT

Downstream 100 bases:

>100_bases
CTAATGTAGGGATTTTAGCATAGTTTTGAGATCGCCCTTAAAATATCTCCATCGGAAAGTATTCCAACAAGTTTATTTTC
GCTGTTAATTACCGGTAACT

Product: putative TIM-barrel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKKLDKIYTIPKKIVLAPMAGITDGDFCLKYTDTFGIVCLGAFNLDFDTDLASKKICNRGRKEFIYDLIEIDQKISSEIE
KAKKSNSLVSVNIRFNDFSKAKSHIVEISKNADILELNCHCRQPEITYLNLGQNLLKFENESKLINFLENIQKLNLEIPI
FLKLRANFLKAEELIKSLDKVRGYFDGIHIDCFNPGKNHADLEYLKKIRENFPEKIIIGNNSVNSVESAKEMLEYADFVS
VARCVLSNNIEWINKM

Sequences:

>Translated_256_residues
MKKLDKIYTIPKKIVLAPMAGITDGDFCLKYTDTFGIVCLGAFNLDFDTDLASKKICNRGRKEFIYDLIEIDQKISSEIE
KAKKSNSLVSVNIRFNDFSKAKSHIVEISKNADILELNCHCRQPEITYLNLGQNLLKFENESKLINFLENIQKLNLEIPI
FLKLRANFLKAEELIKSLDKVRGYFDGIHIDCFNPGKNHADLEYLKKIRENFPEKIIIGNNSVNSVESAKEMLEYADFVS
VARCVLSNNIEWINKM
>Mature_256_residues
MKKLDKIYTIPKKIVLAPMAGITDGDFCLKYTDTFGIVCLGAFNLDFDTDLASKKICNRGRKEFIYDLIEIDQKISSEIE
KAKKSNSLVSVNIRFNDFSKAKSHIVEISKNADILELNCHCRQPEITYLNLGQNLLKFENESKLINFLENIQKLNLEIPI
FLKLRANFLKAEELIKSLDKVRGYFDGIHIDCFNPGKNHADLEYLKKIRENFPEKIIIGNNSVNSVESAKEMLEYADFVS
VARCVLSNNIEWINKM

Specific function: Unknown

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005270
- InterPro:   IPR001269 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 29381; Mature: 29381

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLDKIYTIPKKIVLAPMAGITDGDFCLKYTDTFGIVCLGAFNLDFDTDLASKKICNRG
CCCHHHHHHCCHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHCC
RKEFIYDLIEIDQKISSEIEKAKKSNSLVSVNIRFNDFSKAKSHIVEISKNADILELNCH
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHEEECCCCCEEEEECC
CRQPEITYLNLGQNLLKFENESKLINFLENIQKLNLEIPIFLKLRANFLKAEELIKSLDK
CCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
VRGYFDGIHIDCFNPGKNHADLEYLKKIRENFPEKIIIGNNSVNSVESAKEMLEYADFVS
HHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
VARCVLSNNIEWINKM
HHHHHHHCCCHHHHCC
>Mature Secondary Structure
MKKLDKIYTIPKKIVLAPMAGITDGDFCLKYTDTFGIVCLGAFNLDFDTDLASKKICNRG
CCCHHHHHHCCHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHCC
RKEFIYDLIEIDQKISSEIEKAKKSNSLVSVNIRFNDFSKAKSHIVEISKNADILELNCH
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHEEECCCCCEEEEECC
CRQPEITYLNLGQNLLKFENESKLINFLENIQKLNLEIPIFLKLRANFLKAEELIKSLDK
CCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
VRGYFDGIHIDCFNPGKNHADLEYLKKIRENFPEKIIIGNNSVNSVESAKEMLEYADFVS
HHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
VARCVLSNNIEWINKM
HHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]