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The map label for this gene is yciO [C]

Identifier: 45357749

GI number: 45357749

Start: 194539

End: 195159

Strand: Direct

Name: yciO [C]

Synonym: MMP0186

Alternate gene names: 45357749

Gene position: 194539-195159 (Clockwise)

Preceding gene: 45357748

Following gene: 45357751

Centisome position: 11.71

GC content: 33.82

Gene sequence:

>621_bases
ATGAAAACTTTCGAGATTTCAGAAAGTAATCTCAAAAATTGTGAAAAAGAGATAGAAACCGCAAAGAAAATGATATTGGG
CGGAAAAATTATTCTCTGCGGGACTGACACTCTTTACGGCCTTTCTACAAATGCATTAGACAAAAATGCAATTGAAAAAA
TCTATTCAATAAAAGAAAGGGATCCAAATAAGCCAATTTCGATAAGTCTCGGCGAAAAAAAACAGATCGAAAACTACGTT
TATGTGGACGAAACCGCAAAGAAAATAATCGAAAAATTCATGCCTGGCCCAATTACAGTTATATTGAAGAAAAAAGATAT
TATTCCAGATATATTGGGAAAGGATGACGTTGGAGTTAGAATTCCCGATAACGACGTTATAAGAAAGATTGCAGTTGTTC
CATTAACAACAACAAGTGCAAATATCAGTGGAAAAACTGCTCCAACGTCGCTTGAAGAAGTAGACCAAATAATAAAAGAA
AAAGTCGATTTAATAGTTGATACGGGACCGTGTAAGTACAAAGTGCAGTCCACAATTGTAAAAGTGATTGATGGAAAAAT
AGAATTGATAAGGGAAGGCAAAATCCCATTTGAAGAGATTTTAAAAGCAGTAAATGAATAA

Upstream 100 bases:

>100_bases
TAAATGTTGTTGACGACTTTATTAATTATGAATTTAAGGAAAGAACATGCTTTTGTAAATCCGCGCTTGAAAACGCGGTA
ATGTAAAAAAAGGGATATTT

Downstream 100 bases:

>100_bases
TTTTTTATCTATTTTTGTAAATTTTAAAATTTTAATAAAAGTTAAAAAAAATTAAAAATCAGTTATATTTTATCTTTTTC
CAAGTTCTTCGACCATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKERDPNKPISISLGEKKQIENYV
YVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVGVRIPDNDVIRKIAVVPLTTTSANISGKTAPTSLEEVDQIIKE
KVDLIVDTGPCKYKVQSTIVKVIDGKIELIREGKIPFEEILKAVNE

Sequences:

>Translated_206_residues
MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKERDPNKPISISLGEKKQIENYV
YVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVGVRIPDNDVIRKIAVVPLTTTSANISGKTAPTSLEEVDQIIKE
KVDLIVDTGPCKYKVQSTIVKVIDGKIELIREGKIPFEEILKAVNE
>Mature_206_residues
MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKERDPNKPISISLGEKKQIENYV
YVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVGVRIPDNDVIRKIAVVPLTTTSANISGKTAPTSLEEVDQIIKE
KVDLIVDTGPCKYKVQSTIVKVIDGKIELIREGKIPFEEILKAVNE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=191, Percent_Identity=28.7958115183246, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI87081864, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=192, Percent_Identity=31.25, Blast_Score=74, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6321269, Length=190, Percent_Identity=29.4736842105263, Blast_Score=86, Evalue=6e-18,
Organism=Drosophila melanogaster, GI78707274, Length=192, Percent_Identity=27.6041666666667, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22886; Mature: 22886

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER
CCCEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHC
DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVGVR
CCCCCEEEECCCCHHHCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCEEE
IPDNDVIRKIAVVPLTTTSANISGKTAPTSLEEVDQIIKEKVDLIVDTGPCKYKVQSTIV
CCCHHHHHEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
KVIDGKIELIREGKIPFEEILKAVNE
HHHCCCEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER
CCCEECCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHC
DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVGVR
CCCCCEEEECCCCHHHCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCEEE
IPDNDVIRKIAVVPLTTTSANISGKTAPTSLEEVDQIIKEKVDLIVDTGPCKYKVQSTIV
CCCHHHHHEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
KVIDGKIELIREGKIPFEEILKAVNE
HHHCCCEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]