| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523533
Identifier: 42523533
GI number: 42523533
Start: 1967346
End: 1968314
Strand: Direct
Name: 42523533
Synonym: Bd2060
Alternate gene names: NA
Gene position: 1967346-1968314 (Clockwise)
Preceding gene: 42523529
Following gene: 42523536
Centisome position: 52.01
GC content: 51.39
Gene sequence:
>969_bases ATGACAAAAACAGCAAAACAAATCCTCATTTTATTGGTGTCCCTTTTATCAACCCACAGCTTTGCCGCCCCGACCGGGAA AATCTCGGACTCCCTGGTGGAAAATCTGGCCTGTGACCGGATTTCGACCGATGAAATCTATCGACGCATCCGCCCCGAGT CTTTAGGCAGCAGCTATCACACTCTGTCAGTGAACTGGCCGTTTTCAGCCGGGCTGTATGATCTGGCGGCGTGCTGGTCC TTGTCGCGCACGCAGCGTCTGTTCTTTTATCTGTCGCGCTGGAATCAGCACAGCGATCCAACGCCTCAGCAGACAACTGA AATCCTGGATATGGTGCGCGGCAGTCGTCCGTACGCTTCAGGCAGCGGACTGAAAGAAACGGCATTGAGTGAATTTAAAG TTTTCAGCCAAAAAGATTCCCAGTGGCGCACTAATACGCCGTTGTGGTCGCAGATGCAGTACGGGTTTTCCCAGAATTTT TCAAACGGCAAAACAATGTACCGCGCCTGGAAGCATGAAATTGAACACTATCAAAAAGAGCGCTTTCATGAGTTTGCAAA AAACCTGAAATTCGTGATTGGTGATGACGCCCGCAGTGGTCGCAAGAACCGCCAGACCCGTGATGTGCTTTTAAGAAACC TTGAATCCCACCGTCTGACTTTGCTTTTGTTACGCCCCACCCGCACCGCCCAGCACATTGTGGTGGCCAAGTCCTTTGAA ATTAAAAGCAACGGCCGGATCGAAATCCGCGTCTATGATTCCAATCAGCCTCTCCGGGATCAGATCGTGGTTTTTGATGG ACGCGAGAACGACTTCTATGCACCCGACATCGTGCGAGGGCTGCCTCGGGTGAAGAACGCGAACGACGCTATCGGTGTCT TTATCGTGGATGAATACGAACGAAGCCTGGTCGACACGGCCTTACTGAAACACTACAAAAAAGCTTGCTCAGCCCCGACC GGAACGTAA
Upstream 100 bases:
>100_bases TGGCCTTTTTAGCTGTTCTTCCCCCATGAAACCTCCTCAAGTATGTTAAACGATAGCAACTTGACGGGGCATCAATTCTT GCGGTCTCTGGACCTTAGTT
Downstream 100 bases:
>100_bases GCTGAAGCAGAAATAAAAAAGCCACCCTTATCAGGTGGCTTTTTCTTTGAAACGTACCGAAATATTTGAAATTTAGTTGC CGGACATTTTGCAGATTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MTKTAKQILILLVSLLSTHSFAAPTGKISDSLVENLACDRISTDEIYRRIRPESLGSSYHTLSVNWPFSAGLYDLAACWS LSRTQRLFFYLSRWNQHSDPTPQQTTEILDMVRGSRPYASGSGLKETALSEFKVFSQKDSQWRTNTPLWSQMQYGFSQNF SNGKTMYRAWKHEIEHYQKERFHEFAKNLKFVIGDDARSGRKNRQTRDVLLRNLESHRLTLLLLRPTRTAQHIVVAKSFE IKSNGRIEIRVYDSNQPLRDQIVVFDGRENDFYAPDIVRGLPRVKNANDAIGVFIVDEYERSLVDTALLKHYKKACSAPT GT
Sequences:
>Translated_322_residues MTKTAKQILILLVSLLSTHSFAAPTGKISDSLVENLACDRISTDEIYRRIRPESLGSSYHTLSVNWPFSAGLYDLAACWS LSRTQRLFFYLSRWNQHSDPTPQQTTEILDMVRGSRPYASGSGLKETALSEFKVFSQKDSQWRTNTPLWSQMQYGFSQNF SNGKTMYRAWKHEIEHYQKERFHEFAKNLKFVIGDDARSGRKNRQTRDVLLRNLESHRLTLLLLRPTRTAQHIVVAKSFE IKSNGRIEIRVYDSNQPLRDQIVVFDGRENDFYAPDIVRGLPRVKNANDAIGVFIVDEYERSLVDTALLKHYKKACSAPT GT >Mature_321_residues TKTAKQILILLVSLLSTHSFAAPTGKISDSLVENLACDRISTDEIYRRIRPESLGSSYHTLSVNWPFSAGLYDLAACWSL SRTQRLFFYLSRWNQHSDPTPQQTTEILDMVRGSRPYASGSGLKETALSEFKVFSQKDSQWRTNTPLWSQMQYGFSQNFS NGKTMYRAWKHEIEHYQKERFHEFAKNLKFVIGDDARSGRKNRQTRDVLLRNLESHRLTLLLLRPTRTAQHIVVAKSFEI KSNGRIEIRVYDSNQPLRDQIVVFDGRENDFYAPDIVRGLPRVKNANDAIGVFIVDEYERSLVDTALLKHYKKACSAPTG T
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37046; Mature: 36915
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTAKQILILLVSLLSTHSFAAPTGKISDSLVENLACDRISTDEIYRRIRPESLGSSYH CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCEE TLSVNWPFSAGLYDLAACWSLSRTQRLFFYLSRWNQHSDPTPQQTTEILDMVRGSRPYAS EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC GSGLKETALSEFKVFSQKDSQWRTNTPLWSQMQYGFSQNFSNGKTMYRAWKHEIEHYQKE CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RFHEFAKNLKFVIGDDARSGRKNRQTRDVLLRNLESHRLTLLLLRPTRTAQHIVVAKSFE HHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEE IKSNGRIEIRVYDSNQPLRDQIVVFDGRENDFYAPDIVRGLPRVKNANDAIGVFIVDEYE ECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEEECHHH RSLVDTALLKHYKKACSAPTGT HHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TKTAKQILILLVSLLSTHSFAAPTGKISDSLVENLACDRISTDEIYRRIRPESLGSSYH CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCEE TLSVNWPFSAGLYDLAACWSLSRTQRLFFYLSRWNQHSDPTPQQTTEILDMVRGSRPYAS EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC GSGLKETALSEFKVFSQKDSQWRTNTPLWSQMQYGFSQNFSNGKTMYRAWKHEIEHYQKE CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH RFHEFAKNLKFVIGDDARSGRKNRQTRDVLLRNLESHRLTLLLLRPTRTAQHIVVAKSFE HHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEE IKSNGRIEIRVYDSNQPLRDQIVVFDGRENDFYAPDIVRGLPRVKNANDAIGVFIVDEYE ECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEEECHHH RSLVDTALLKHYKKACSAPTGT HHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA