| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42523385
Identifier: 42523385
GI number: 42523385
Start: 1825246
End: 1825623
Strand: Direct
Name: 42523385
Synonym: Bd1906
Alternate gene names: NA
Gene position: 1825246-1825623 (Clockwise)
Preceding gene: 42523384
Following gene: 42523386
Centisome position: 48.25
GC content: 48.15
Gene sequence:
>378_bases ATGCTTCTGACTGCTTTTGTTTCTTTGTTGTCTTTGTCTGTGACGGCGCAAGCCGCTGTTATGCAGGTGGACTGTGTTGG TGGTGACACCCAGATTACTGCCAACCTGATTGTTGAAGGTCGCAAGGTGACAGGTTTTGTGGCTGCGGCAGGTGCCGGCG TTGAAGCTTTCCAGGCAGATGCCCATGGCTCCTACATCTTCTACAAAGCGGGTGAGTACTACACAGATTTCGATCTTGAG ATCATCGAGTTCTGGGGCATTTCCGGTGATCAGTCTGTAGGCTACAAGTCCTACACCGATAAAAACGGCAAATTTGTTCA AACTGTTCTTGTGAATAAAAAAGCCGTTAATGCCCAGTGCATGATCGGTAAGCAATAG
Upstream 100 bases:
>100_bases TTCAGAGCTGCGGCATCTATTGAGCCGGGCATCTATTGTTCGTATAGTTTTTGGCGTGAATAGAGAATTGGAAATTTTAA CGAAAGGTTTTCCTGTGAAA
Downstream 100 bases:
>100_bases TCCTTCGAATGCAAGGATGACTTTAATTAAGGCGTGGGGGACCCCTCTGCGCCTTTTTTATTGGTTTTCAGTCATGCAAA ACACGCATATCTGGATTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 125; Mature: 125
Protein sequence:
>125_residues MLLTAFVSLLSLSVTAQAAVMQVDCVGGDTQITANLIVEGRKVTGFVAAAGAGVEAFQADAHGSYIFYKAGEYYTDFDLE IIEFWGISGDQSVGYKSYTDKNGKFVQTVLVNKKAVNAQCMIGKQ
Sequences:
>Translated_125_residues MLLTAFVSLLSLSVTAQAAVMQVDCVGGDTQITANLIVEGRKVTGFVAAAGAGVEAFQADAHGSYIFYKAGEYYTDFDLE IIEFWGISGDQSVGYKSYTDKNGKFVQTVLVNKKAVNAQCMIGKQ >Mature_125_residues MLLTAFVSLLSLSVTAQAAVMQVDCVGGDTQITANLIVEGRKVTGFVAAAGAGVEAFQADAHGSYIFYKAGEYYTDFDLE IIEFWGISGDQSVGYKSYTDKNGKFVQTVLVNKKAVNAQCMIGKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13376; Mature: 13376
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLTAFVSLLSLSVTAQAAVMQVDCVGGDTQITANLIVEGRKVTGFVAAAGAGVEAFQAD CHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEEECCEEEEEEEECCCCCEEEECC AHGSYIFYKAGEYYTDFDLEIIEFWGISGDQSVGYKSYTDKNGKFVQTVLVNKKAVNAQC CCCCEEEEECCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE MIGKQ EEECC >Mature Secondary Structure MLLTAFVSLLSLSVTAQAAVMQVDCVGGDTQITANLIVEGRKVTGFVAAAGAGVEAFQAD CHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEEECCEEEEEEEECCCCCEEEECC AHGSYIFYKAGEYYTDFDLEIIEFWGISGDQSVGYKSYTDKNGKFVQTVLVNKKAVNAQC CCCCEEEEECCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE MIGKQ EEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA