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The map label for this gene is psd [H]

Identifier: 42523341

GI number: 42523341

Start: 1786985

End: 1787854

Strand: Direct

Name: psd [H]

Synonym: Bd1861

Alternate gene names: 42523341

Gene position: 1786985-1787854 (Clockwise)

Preceding gene: 42523338

Following gene: 42523344

Centisome position: 47.24

GC content: 51.26

Gene sequence:

>870_bases
GTGACAAAGGGGTCTATTGCAGATATAAAGATTTCTATGTCAGCAATTACCAGAATTCTACCAAAACGTCGTCTTAGCCG
CTGGGTCGGTCACTTTATGCACTGGAAGGGCCCTTCTTTGTGGGCACGCCTGTCTATCCGGGGCTTTGCGTGGCTTTATA
ACATCGATCTGGCCGAGGCGGAAAAGTCCTATGACCAATATCCCTCCATTGGTGAATTCTTCGTTCGCCGCTTAAAAACC
GGCATTCGCCCTGTGGGCACCGGTTGGGCGGTTCATCCGGCTGACAGTAAAATCACGCAGGCCGCTGCCATTGATAACGG
CACTTTAATTCAGGCCAAGGGTCTGACTTACAAGCTGAAGGACTTCACGCAAGATCCGGACTGCGATAAGAAATGGGCCG
GCGGCTTCTTTATGACCTACTATCTTTGCCCGACGGACTATCACCGTGTGCATTCTCCGGTGGATGGAAACATCACCGAT
GTTCGTTATATGCCAGGTGAATTGTGGCCGGTGAATGAGTGGAGCACAACGAACGTTCCGGATCTGTTCTCCGTGAACGA
ACGCGTTCTGGTGGAGATTGAAACGGATCTGGGGCCTGTGGGTGTGGTCTTTGTTGGCGCCACCAACGTGGGTCACATTG
TGCTGAGCTTTGATGAAAAAATCCGCGGAAATCAAAAAGGCCCTCATATCTTTGAGCACAAACACTACAGCCCCGAGATC
CCGGTACACAAAGGATCTGAGCTGGGTATGTTCCGCATGGGTTCCACCGTGGTGATGTTGTATCCTCCGAGCTTCCGTCA
GAAGTTTGAAGGTCACATGAATCTGGGGCCATCCGTGCGCGTGAATGCCGATCTGATCAAAAATCCATAA

Upstream 100 bases:

>100_bases
TTTCAAGATTCTGAATAATCTTGGACATTCTGCCTCCGGGACCTTTTTAGGGTCCAAATTAGGGTCTGATTTCAATACAC
TGTACTAGAAAGTCCTTTAG

Downstream 100 bases:

>100_bases
ATTGGATCACGGGCATTTTTGAAAATTACGACAGGTTTTAGAGGAGGTGTTTTGTACCTCCTCTTTTGTTAGAAGTCTGC
GACGGTTGTCGAAATGATAT

Product: phosphatidylserine decarboxylase proenzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTKGSIADIKISMSAITRILPKRRLSRWVGHFMHWKGPSLWARLSIRGFAWLYNIDLAEAEKSYDQYPSIGEFFVRRLKT
GIRPVGTGWAVHPADSKITQAAAIDNGTLIQAKGLTYKLKDFTQDPDCDKKWAGGFFMTYYLCPTDYHRVHSPVDGNITD
VRYMPGELWPVNEWSTTNVPDLFSVNERVLVEIETDLGPVGVVFVGATNVGHIVLSFDEKIRGNQKGPHIFEHKHYSPEI
PVHKGSELGMFRMGSTVVMLYPPSFRQKFEGHMNLGPSVRVNADLIKNP

Sequences:

>Translated_289_residues
MTKGSIADIKISMSAITRILPKRRLSRWVGHFMHWKGPSLWARLSIRGFAWLYNIDLAEAEKSYDQYPSIGEFFVRRLKT
GIRPVGTGWAVHPADSKITQAAAIDNGTLIQAKGLTYKLKDFTQDPDCDKKWAGGFFMTYYLCPTDYHRVHSPVDGNITD
VRYMPGELWPVNEWSTTNVPDLFSVNERVLVEIETDLGPVGVVFVGATNVGHIVLSFDEKIRGNQKGPHIFEHKHYSPEI
PVHKGSELGMFRMGSTVVMLYPPSFRQKFEGHMNLGPSVRVNADLIKNP
>Mature_288_residues
TKGSIADIKISMSAITRILPKRRLSRWVGHFMHWKGPSLWARLSIRGFAWLYNIDLAEAEKSYDQYPSIGEFFVRRLKTG
IRPVGTGWAVHPADSKITQAAAIDNGTLIQAKGLTYKLKDFTQDPDCDKKWAGGFFMTYYLCPTDYHRVHSPVDGNITDV
RYMPGELWPVNEWSTTNVPDLFSVNERVLVEIETDLGPVGVVFVGATNVGHIVLSFDEKIRGNQKGPHIFEHKHYSPEIP
VHKGSELGMFRMGSTVVMLYPPSFRQKFEGHMNLGPSVRVNADLIKNP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=304, Percent_Identity=29.6052631578947, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1790604, Length=256, Percent_Identity=35.546875, Blast_Score=142, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI71980843, Length=254, Percent_Identity=30.3149606299213, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71980840, Length=254, Percent_Identity=30.3149606299213, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=36.6459627329193, Blast_Score=92, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6321609, Length=244, Percent_Identity=27.8688524590164, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24649526, Length=309, Percent_Identity=31.0679611650485, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24649528, Length=309, Percent_Identity=31.0679611650485, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24649524, Length=309, Percent_Identity=31.0679611650485, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 32662; Mature: 32531

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGSIADIKISMSAITRILPKRRLSRWVGHFMHWKGPSLWARLSIRGFAWLYNIDLAEA
CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCHHHH
EKSYDQYPSIGEFFVRRLKTGIRPVGTGWAVHPADSKITQAAAIDNGTLIQAKGLTYKLK
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHEECCCCCEEEECCCEEEEC
DFTQDPDCDKKWAGGFFMTYYLCPTDYHRVHSPVDGNITDVRYMPGELWPVNEWSTTNVP
CCCCCCCCCCHHCCCEEEEEEECCCCHHHHCCCCCCCEEEEEECCCCEEECCCCCCCCCC
DLFSVNERVLVEIETDLGPVGVVFVGATNVGHIVLSFDEKIRGNQKGPHIFEHKHYSPEI
CCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECHHHCCCCCCCCEECCCCCCCCC
PVHKGSELGMFRMGSTVVMLYPPSFRQKFEGHMNLGPSVRVNADLIKNP
CCCCCCCCCEEEECCEEEEEECCHHHHHHCCCCCCCCCEEEEHHCCCCC
>Mature Secondary Structure 
TKGSIADIKISMSAITRILPKRRLSRWVGHFMHWKGPSLWARLSIRGFAWLYNIDLAEA
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCHHHH
EKSYDQYPSIGEFFVRRLKTGIRPVGTGWAVHPADSKITQAAAIDNGTLIQAKGLTYKLK
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHEECCCCCEEEECCCEEEEC
DFTQDPDCDKKWAGGFFMTYYLCPTDYHRVHSPVDGNITDVRYMPGELWPVNEWSTTNVP
CCCCCCCCCCHHCCCEEEEEEECCCCHHHHCCCCCCCEEEEEECCCCEEECCCCCCCCCC
DLFSVNERVLVEIETDLGPVGVVFVGATNVGHIVLSFDEKIRGNQKGPHIFEHKHYSPEI
CCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECHHHCCCCCCCCEECCCCCCCCC
PVHKGSELGMFRMGSTVVMLYPPSFRQKFEGHMNLGPSVRVNADLIKNP
CCCCCCCCCEEEECCEEEEEECCHHHHHHCCCCCCCCCEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA